Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00007306 |
| length | 2991 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 2 |
| gene id | AMCG00007306 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030123.1 |
| NCBI id | CM030123.1 |
| chromosome length | 53548854 |
| location | 10739045 ~ 10743675 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0033151 | V(D)J recombination | biological_process |
| GO:0010390 | histone monoubiquitination | biological_process |
| GO:0090305 | nucleic acid phosphodiester bond hydrolysis | biological_process |
| GO:0030183 | B cell differentiation | biological_process |
| GO:0033077 | T cell differentiation in thymus | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0004519 | endonuclease activity | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0042803 | protein homodimerization activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K10628 | RAG1; V(D)J recombination-activating protein 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28422 | lncRNA | upstream | 53977 | 10626674 ~ 10685068 (+) | True | G22652 |
| TU28342 | lncRNA | upstream | 417187 | 10320469 ~ 10321858 (+) | True | G22596 |
| TU28244 | lncRNA | upstream | 497637 | 10239589 ~ 10241408 (+) | True | G22528 |
| TU28245 | lncRNA | upstream | 497637 | 10239589 ~ 10241408 (+) | False | G22528 |
| TU28246 | lncRNA | upstream | 499180 | 10152489 ~ 10239865 (+) | False | G22528 |
| TU28495 | lncRNA | downstream | 367668 | 11111343 ~ 11111723 (+) | True | G22712 |
| TU28504 | lncRNA | downstream | 486150 | 11229825 ~ 11230393 (+) | True | G22720 |
| TU28516 | lncRNA | downstream | 768478 | 11512153 ~ 11522358 (+) | True | G22730 |
| TU28528 | lncRNA | downstream | 797308 | 11540983 ~ 11541524 (+) | True | G22738 |
| TU28532 | lncRNA | downstream | 827277 | 11570952 ~ 11573862 (+) | True | G22741 |
| AMCG00007305 | mRNA | upstream | 71750 | 10660181 ~ 10667295 (+) | True | AMCG00007305 |
| AMCG00007308 | mRNA | upstream | 84056 | 10628350 ~ 10654989 (+) | True | AMCG00007308 |
| AMCG00007307 | mRNA | upstream | 127135 | 10611533 ~ 10611910 (+) | False | AMCG00007307 |
| AMCG00007304 | mRNA | upstream | 130030 | 10577246 ~ 10609015 (+) | True | AMCG00007304 |
| AMCG00007303 | mRNA | upstream | 161881 | 10534157 ~ 10577164 (+) | True | AMCG00007303 |
| AMCG00007310 | mRNA | downstream | 15159 | 10758834 ~ 10777707 (+) | True | AMCG00007310 |
| AMCG00007311 | mRNA | downstream | 844959 | 11588634 ~ 11603718 (+) | True | AMCG00007311 |
| AMCG00007317 | mRNA | downstream | 2798081 | 13541756 ~ 13551121 (+) | True | AMCG00007317 |
| AMCG00007321 | mRNA | downstream | 2879469 | 13623144 ~ 13624807 (+) | True | AMCG00007321 |
| AMCG00007322 | mRNA | downstream | 2902952 | 13646627 ~ 13647013 (+) | True | AMCG00007322 |
| TU28420 | other | upstream | 125941 | 10611196 ~ 10613104 (+) | True | AMCG00007307 |
| TU28037 | other | upstream | 1239317 | 9436524 ~ 9499728 (+) | True | G22372 |
| TU27900 | other | upstream | 2027734 | 8704657 ~ 8711311 (+) | True | AMCG00007253 |
| TU27825 | other | upstream | 2342803 | 8367436 ~ 8396242 (+) | True | AMCG00007243 |
| TU27445 | other | upstream | 3360099 | 7374323 ~ 7378946 (+) | True | G21891 |
| TU28829 | other | downstream | 3734998 | 14478673 ~ 14489692 (+) | True | AMCG00007337 |
| TU28988 | other | downstream | 4542822 | 15286497 ~ 15287960 (+) | False | AMCG00007352 |
| TU29675 | other | downstream | 7455093 | 18198768 ~ 18201960 (+) | True | AMCG00007417 |
| TU29676 | other | downstream | 7463403 | 18207078 ~ 18208308 (+) | True | G23698 |
| TU29705 | other | downstream | 7546433 | 18290108 ~ 18292338 (+) | True | G23724 |
