RNA id: TU28420



Basic Information


Item Value
RNA id TU28420
length 1880
RNA type TUCP
GC content 0.44
exon number 2
gene id AMCG00007307
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10611196 ~ 10613104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATCCACGGCTGCCTGCCTGAGTTCAGTGCAAaagcagagagagtgagagcagctGCAGCAGAAGCAACAGCATCAAGCCAAGCAAGCTACAACAGCCCAGTGCCTGCTGCACTAAACTGCCTTGAACAGGATCACAATCAGCGAGCCAGCAAAGGCAAGGAGAGCAGAGGAGGATCAGATTCACCTTGACACTCTGACCATctgggatttaaaaacaaaacattcactGAGACAAGAAAAGACTCTCGTTTCCTGAAGGAGAAGGTCCACAAACCCTTTGGTCTCGCCCATTGTTTCTACTGCCACCCACAGCCTCCAAGAAGTTCCGCGAGGAGCCATGGCAAGCAGACACGTGGAGTCAGGAGGGTACCAGACCGTGGTGCCTGCTCACCTGCTGGCAGCTATGATGGAGGAATTTCCCCAGCATCTGCCTGTGCCCAAATCCCCGGCCAGGGGCAAGAGCCGGATGCGCCGCCCCCGCCAGTCCCGCTTCAAGACCCAACCAGTGACCTTCGCTGAGATCGCTGAAGTGGAGGAGGAAGGTGTTTCGGCGCTGGAGGAAGAGCGAGCCCGGAAGTCCTTCTTGCAGTCGCTGGAAAGCCTGAGACGCAGTACTCAGAACTTGCACAGCTCCAGCCACTGCCCCAAGGGCTGGGTGGCTACGTCCGCCATGCAGGGCAGTGTGGACTCCAGCGACTCAGACTCCACGCAGTAGAAAAGGACCGTTTTTCCCCCACGCAGACCTCGGTGATCGCTGGGGCTGCCGCTTGCTTCATAATGAAGCCTGACTgtatttgaactttttttttaacaaatatctagaacaaatctgctcaatatacatttaagcattggtatttatttcaatatatatatatatatatgtatgtatgcatttgatgcatttaaaattgagGTTTAATGTAGGCTGTTAAAAGCTTAGGCATGCTTTACGAATCAAAGTGTAGTGATTCCTTTTGCAAACTGATGAATTGCAGTGTATTGCTGTAACACAGGGGTAAATTGCCAATGcaatctttttctttcaagGTACATATaatggagaggaaggggagtttAATTAATAGGGGGGGGTCTTTGataatatagaaaatgttttccttttttaacattGTGCCTGCGAATATCTGCTGAAATGCAAGCAGCAAGTCGGGTCAGGCAGCAGCAGTTCAGGGATGTATGCTAGTTGTTGGGAATGTTCTGCAACAGAGAATTAAAGAATCCAGAAAGTGTGATGACCGGAGACGCGCACACAATGTCTGGCTCGGAGGACTTGAGATTAATCGAGAACCATCGGACACTCATTAAGTGTGCAAAGTATGCAAGCAATGGATATGCCATTTTTATCAGACTCCTGTAAAAAGGGGGAGGGTTTACTTTGTTTAAGGGACAGAAAGTATAGTTGAATTCTCGCCAGCAGCCCTACATAAGGGAGCTGCACTTCTAAACACCGAACATTATTGGCAGAAGTCGACCACTTTGTAAGGAAACATGAGAACCTTGAtgacagatattattattaatatgattttgtATTGGAGGAAAGAGAAGTGCAAGTTTACTGTGTATGCTTGTGTTAAATGGTGTTGATATTTATTGAACTGATATGTTTTGATATGGAAATGGAATAtattctcctttctttctttgtttctaaaTCACCTGttggtaaaaaaaagaaaatattctaaactttataatgttattttacacacatGAAAGCTGGAGCTTTCCTATTTactgtaataaatatttgaaaagaaaagaaaaatcctgtttctgtgttttccctTTACATGTGTGGAGAAAATTATTCACCATGCAGCTCTGTTTACCATGTATTAGACATTAAATCCCTG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU28342 lncRNA upstream 289338 10320469 ~ 10321858 (+) True G22596
TU28244 lncRNA upstream 369788 10239589 ~ 10241408 (+) True G22528
TU28245 lncRNA upstream 369788 10239589 ~ 10241408 (+) False G22528
TU28246 lncRNA upstream 371331 10152489 ~ 10239865 (+) False G22528
TU28168 lncRNA upstream 669308 9936920 ~ 9941888 (+) False AMCG00007278
TU28422 lncRNA downstream 13570 10626674 ~ 10685068 (+) True G22652
TU28495 lncRNA downstream 498239 11111343 ~ 11111723 (+) True G22712
TU28504 lncRNA downstream 616721 11229825 ~ 11230393 (+) True G22720
TU28516 lncRNA downstream 899049 11512153 ~ 11522358 (+) True G22730
TU28528 lncRNA downstream 927879 11540983 ~ 11541524 (+) True G22738
AMCG00007304 mRNA upstream 2181 10577246 ~ 10609015 (+) True AMCG00007304
AMCG00007303 mRNA upstream 34032 10534157 ~ 10577164 (+) True AMCG00007303
AMCG00007300 mRNA upstream 190285 10394165 ~ 10420911 (+) True AMCG00007300
AMCG00007301 mRNA upstream 227913 10373970 ~ 10383283 (+) True AMCG00007301
AMCG00007292 mRNA upstream 253591 10343702 ~ 10357605 (+) True AMCG00007292
AMCG00007308 mRNA downstream 15246 10628350 ~ 10654989 (+) True AMCG00007308
AMCG00007305 mRNA downstream 47077 10660181 ~ 10667295 (+) True AMCG00007305
AMCG00007306 mRNA downstream 125941 10739045 ~ 10743675 (+) True AMCG00007306
AMCG00007310 mRNA downstream 145730 10758834 ~ 10777707 (+) True AMCG00007310
AMCG00007311 mRNA downstream 975530 11588634 ~ 11603718 (+) True AMCG00007311
TU28037 other upstream 1111468 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 1899885 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 2214954 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 3232250 7374323 ~ 7378946 (+) True G21891
TU26964 other upstream 5030902 5565941 ~ 5580294 (+) False AMCG00007148
TU28829 other downstream 3865569 14478673 ~ 14489692 (+) True AMCG00007337
TU28988 other downstream 4673393 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 7585664 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 7593974 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 7677004 18290108 ~ 18292338 (+) True G23724

Expression Profile


TU28420 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

TU28420 Expression in each Bioproject

Bar chart with 6 bars.
TU28420 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.