RNA id: AMCG00007309


Basic Information

Item Value
RNA id AMCG00007309
length 1599
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00007309
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 10752238 ~ 10753836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCTGCAATTGGTTTCAGCTGTCAACTGCACCAACCTGATCCACCCTGGCTTCTCTCTGATGAGCCTCGATGGAGATGTATTCCTATTTGGTCAGAAAGGCTGGCCCAAACGTTCCTGCCCCACTGGGGTCTTCAATGTCCGGTTAAAGAATGAAGAGCTCAAGCTGCGGCCAGTGTGTTTCTCCAGTGATTCATGCTACATGCCACCTCTGCGTTGCCCTGCTGTTACCCGAATAGGTCCAGAGGATCCCGAGTGTAACGATGAGGAGAAGTACCTTATTCATGGTGGCAGGACTCCCAATAATGAGATCTCGGACCGTTTCTATGTCATGTCTATGGAAAGCCGAGGCTGCAACAAGAAGGTGACCCTCAAGTGTGTGGAGAAAGAACTGGTTGGAGACATCCCTCAAGGCCGGTATGGTCACACCATCAGCATGGTTCATAGCCGTGGGAAGAGCACCTGCCTTCTCTTCGGTGGAAGGTCCTATATGCCCTCGGGGCAGAGAACAAGTGAAAACTGGAACAGTGTGGTTGATTGCCCTCCTCAAGTGTTTCTCATTGACATGGACTTTGGCTGCTGTACCTCTTACACCTTATCCGAAATGTTGGATGGCCAGTCATTTCATGTGTCTCTCTCCAGAAAGGACTCGGTCTATATTCTGGGAGGTCACACTTTAGCCAGTAACTCCCGTCCTGCTCGGCTCTTCCGTTTGCGTGTGGAGCTCTTGCTGGGCAGCCCAGTCGTGAACTGTGAGGTTCTGAATACTGGCCTGCCTTTAACCAGTGCCATTGTGACGCGGCTGGGCCCAGAACACGAGTACGTCATCTTGGGGGGCTACACATCTGAAACCCAGAAACGCCTGGAATGCAACACTGTGGTCTTAGATGACAGTGGGATCCACATAACAGCTAGAGAACCACCAGACTGGACAGGAGAGATCCTCCACAGCAAGACCTGGTTTGGGGGAAACATGGGTGAGGGTGCAGTGCTTATTGGGGTACCGGCAGAGGGAAAACAAGCCTTACCAGAGGCCAACTACTTCTACACAGTCAACTTCCGCCAAGAAGAGGAGCTGATGGGACAGAACTGCAGCCAGGAGTCTACCGATCAAGAGCTGGAGGATTCTGTCCCACTGGAAGACTCGGAGGAGTTCTACTTTAACAGGGAGCCCCATGAGTTGGAGGAGAGCAATGATGAGGATACTTACAATGAGGAGGATGAAGAAGATGAGTCTCAGACCGGTTACTGGATTAAGTGTTGCCTTGACTGTGAAGTGGACATCAACACCTGGGTGCCGTTCTACTCCACTGAGCTCAACAAACCAGCCATGATCTTCTGCTCCCGAGGGGAGGGCGGACATTGGGTTCATGCCCAGTGCATGGATCTCTCTGAAACCCTGCTTGTCCAGCTCTCTCAAGAAAATACCAAGTATTTCTGTGTGGATCACATGGACTTGGTTCAGGGCCTGCAGACCCCTCCGCAGAAGCTACCACCCCTGAAACGCACGCCCATGAAGATCCAACACAGAAAGGCTCCTGTCAAGCTCAAGATGACCCCTGCCAAGAAGACCTTTCTCAGGAGATTGTTTGAATGA

Function

GO:

id name namespace
GO:0033151 V(D)J recombination biological_process
GO:0030183 B cell differentiation biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0005634 nucleus cellular_component
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG:

id description
K10988 RAG2; recombination-activating protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28469 lncRNA downstream 96708 10654174 ~ 10655530 (-) True G22687
TU28447 lncRNA downstream 120304 10628348 ~ 10631934 (-) True G22671
TU28459 lncRNA downstream 139250 10611189 ~ 10612988 (-) True G22680
TU28431 lncRNA downstream 173336 10546996 ~ 10578902 (-) True G22660
TU28372 lncRNA downstream 377019 10373739 ~ 10375219 (-) True G22619
TU28496 lncRNA upstream 357509 11111345 ~ 11111723 (-) True G22713
TU28510 lncRNA upstream 510806 11264642 ~ 11282409 (-) True G22725
TU28520 lncRNA upstream 609761 11363597 ~ 11412595 (-) True G22732
TU28529 lncRNA upstream 787146 11540982 ~ 11541638 (-) True G22739
TU28535 lncRNA upstream 842279 11596115 ~ 11596436 (-) True G22744
AMCG00007302 mRNA downstream 379291 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 425417 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 432607 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007298 mRNA downstream 479630 10265045 ~ 10272608 (-) False AMCG00007298
AMCG00007296 mRNA downstream 492131 10248277 ~ 10260107 (-) True AMCG00007296
AMCG00007312 mRNA upstream 1390080 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007314 mRNA upstream 1508997 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007313 mRNA upstream 1510058 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 1563995 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007316 mRNA upstream 2308958 13062794 ~ 13264962 (-) True AMCG00007316
TU28289 other downstream 562034 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 2356014 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 3245363 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 4738069 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 4931954 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 2597681 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 3191807 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 5567161 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 5567201 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 5776338 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile