RNA id: AMCG00007314


Basic Information

Item Value
RNA id AMCG00007314
length 963
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00007314
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 12262833 ~ 12263877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAATATGAGTGGATTGAATATTCGGTGTCTACTGACtcaattttctgttttgcttgcCGCCACTTTGGGGGTGCATCATCAAGTGCCGGAGACAGGTATGGGGCTCACACCTTCATTGATAATGGATTTTCCTGTTGGAAGAACATTCAGGCCCAGATCAGAGGACATACACTCAACGACAATAGATGACAACAGGGCTGTAGAGGTCCAAGAAAACAGGGCACACTTGAAAGCACTGTTCCGAATTACAGTCCTATTTGGGCGACAGGGCTTGCCTTTTCCCGGCCACAGTGAGGAGGACACTTCTACTAATAAGGGACATTTTCTTGAGTTTGTAGATGTGCTTTCAGAGAGTAACAAGAACATTACATTCAAAACTGACAGGAGATATGGACACTATTTTTTACCAGACACACAAAATGACATGATATGTGTTTTGggggaaagaataaaaaagaccATCATTAATGAGGTAAAAGAAGCtagtttattttctatattgGTAGATGAAACAAAAGACATATCAAAGAAAGAACAGCTTGCAGTCTTCGTCTGCTATGTTCACAGTGGAATTATTAAAGAGCAAGGAATCGGTACCTACCATATGACGGACATTAGTGCAGAAGCACTGGCTAATGCTATCTGTGAGGAGCTTATGAGTCAAGGCATAGACATGCAGCTATGTGTGGGACAGTGCTATGATGGCACTAGTGTTATGCAGGGAAGAGTGAATAGTGTACAGGCAAGAATAAAGGAGCAAGTGCTACACGCAGTGTACATACATTGCCACGCTCACTGTCTTAACCTGGTGTTAGTCAAAACACTCAGTGATGTCCCTCACATCTTAGAGTTCTTCAGCATCATTCAGACTCTGTACACTTTTATCACAAACAGCAATACAAGGCACACATTATTCATTGAGGCTAAAACTCAGTTAAGGCAAAGAGTACTACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28586 lncRNA downstream 169357 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 355339 11907274 ~ 11907494 (-) True G22785
TU28570 lncRNA downstream 371192 11891388 ~ 11891641 (-) True G22779
TU28569 lncRNA downstream 371846 11890669 ~ 11890987 (-) True G22778
TU28559 lncRNA downstream 398673 11863915 ~ 11864160 (-) True G22768
TU28614 lncRNA upstream 729800 12993677 ~ 12993936 (-) True G22819
TU28712 lncRNA upstream 1366368 13630245 ~ 13631291 (-) True G22901
TU28713 lncRNA upstream 1382654 13646531 ~ 13649777 (-) True G22902
TU28752 lncRNA upstream 1768472 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 1796893 14060770 ~ 14061129 (-) True G22941
AMCG00007312 mRNA downstream 128 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007309 mRNA downstream 1508997 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007302 mRNA downstream 1889886 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007295 mRNA downstream 1936012 10320340 ~ 10326821 (-) True AMCG00007295
AMCG00007297 mRNA downstream 1943202 10313591 ~ 10319631 (-) True AMCG00007297
AMCG00007313 mRNA upstream 17 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007315 mRNA upstream 53954 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007316 mRNA upstream 798917 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007320 mRNA upstream 1129023 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007319 mRNA upstream 1312798 13576675 ~ 13614445 (-) True AMCG00007319
TU28289 other downstream 2072629 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 3866609 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 4755958 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 6248664 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 6442549 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 1087640 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 1681766 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 4057120 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 4057160 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 4266297 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile