RNA id: AMCG00007315


Basic Information

Item Value
RNA id AMCG00007315
length 1884
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00007315
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 12317831 ~ 12319714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAGGTCGTAGGTGGAATAGGGCCCTGTCCGACCCTTTGTTTGTTCTGCTGTTGGCTCTTCAGCTGCTGGTGGTGGCTGGCTTGGTGAGAGCCCAGACCTGCCCTTCGGTGTGCTCCTGCAGTAACCAGTTCAGCAAAGTCATCTGCACCCGGCGAGGCCTGAGGGAAGTCCCTGACGGCATCTCCACCAATACGCGCTATCTCAACTTACAGGAGAATCAGATCCAGGTCATCAAGGTGGACAGCTTCAAACACTTGCGCCATTTGGAAATCTTGCAGCTGAGCAAAAACCACATCCGGAATATTGAGATCGGGGCCTTCAATGGTCTGGCCAGTCTCAACACATTGGAACTCTTTGACAACAGGCTCACCACCATCCCCAATGGGGCTTTTGAGTACCTCTCAAAACTGAAGGAGCTCTGGCTGAGGAATAACCCTATCGAGAGCATCCCTTCTTACGCCTTCAACCGGGTGCCTTCCCTGAGGAGGCTGGACCTGGGCGAGCTCAAGCGCCTCTCCTATATCTCTGAGGGGGCCTTCGAGGGCCTCAGCAACCTCCGCTACCTGAACCTGGGCATGTGCAACCTGAAGGAGATCCCCAACCTCATCCCTCTGCTCAAACTCGATGAGCTGGAGCTATCGGGGAACCAGCTCTCTGTCATCCGTCCTGGCTCCTTTAAAGGGCTCATCCACCTTCAGAAGCTGTGGATGATGCACGCGCAGATCCAGGCCATTGAGAGGAACTCCTTTGATGACTTGCAGTCGCTGGTGGAGCTCAATCTGGCCCACAACAACCTGACCCTTCTGCCCCATGACCTTTTTACTCCCCTGCACCACCTGGAGAGGGTCCATTTGCACCACAACCCCTGGAACTGTAATTGTGACATCCTGTGGCTCAGCTGGTGGCTCAAGGAGATGGTTCCTGCAAACACGAGTTGCTGTGCCCGCTGCCACTCTCCCTCCAGCCTCAAGGGGCGCTACATTGGGGAGCTTGATCAGAACTACTTCACATGCTATGCCCCAGTTATCGTGGAACCCCCTGCAGACTTGAATGTGACGGAGGGCATGGCCGCTGAGCTAAAATGCCGGGCATCCACTTCCTTGACGTCGGTCAGTTGGATCACACCCAATGGAACCATAATGACTCACGGGGCTTACAAAGTGCGGATTTCTGTCCTCAATGACGGCACGTTAAATTTCACCAACGTAACAGTACAGGACACGGGGACATACACCTGCATGGTGAGCAACTCGGCGGGCAACACGACGGCTTCTGCCACACTTAATGTGTCGGCCACCGAGAACAGCAGCTTTAGTTACTTTACCACAGTCACAGTGGAAACTATTGAGCCCGCTGTGGAGGAGGGCAGGAACTCAGAACAAAATGTGGGGCCCACACCCCCAAGCGGCTGGACGACCACGTTCACAACCACCTCGCTGTCTCCCAGGAGCACCAAGTCCACAGAGAAGACATTCACCATCCCTGTGACAGAAGTGGGAGAAGGCAGCCTGAATGGGCTGGATGAAGTAATGAAGACTACAAAGATTATCATTGGGTGCTTTGTGGCGATCACCCTTATGGCAGCCGTCATGCTCATAATTTTCTACAAGATGCGCAAGCAGCACCACAGGCAGAACCACCATGCACCAACAAGGACAATTGAGATCATCAATGTGGATGATGAGATTACAGGGGGATCTGCCCTGGAGGGCCATCTGGCCTTGCCAACAATGGAGCACGAGCATCTCAACCACTACAACTCCTATAAGACATCTTATAACCACACCACCAACACAATAAATTCCTTACACAGCTCTGCGCATGAACCTTTGCTAATTCGGGCAAACTCAAAAGACAATGTACAAGAGACccaaatttaa

Function

GO: NA

KEGG:

id description
K07523 LRRC4C, NGL1; netrin-G1 ligand

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28586 lncRNA downstream 224355 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 410337 11907274 ~ 11907494 (-) True G22785
TU28570 lncRNA downstream 426190 11891388 ~ 11891641 (-) True G22779
TU28569 lncRNA downstream 426844 11890669 ~ 11890987 (-) True G22778
TU28559 lncRNA downstream 453671 11863915 ~ 11864160 (-) True G22768
TU28614 lncRNA upstream 673963 12993677 ~ 12993936 (-) True G22819
TU28712 lncRNA upstream 1310531 13630245 ~ 13631291 (-) True G22901
TU28713 lncRNA upstream 1326817 13646531 ~ 13649777 (-) True G22902
TU28752 lncRNA upstream 1712635 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 1741056 14060770 ~ 14061129 (-) True G22941
AMCG00007313 mRNA downstream 10775 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007314 mRNA downstream 53954 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007312 mRNA downstream 55126 12143916 ~ 12262705 (-) True AMCG00007312
AMCG00007309 mRNA downstream 1563995 10752238 ~ 10753836 (-) True AMCG00007309
AMCG00007302 mRNA downstream 1944884 10361701 ~ 10372947 (-) True AMCG00007302
AMCG00007316 mRNA upstream 743080 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007320 mRNA upstream 1073186 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007319 mRNA upstream 1256961 13576675 ~ 13614445 (-) True AMCG00007319
AMCG00007318 mRNA upstream 1358267 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007323 mRNA upstream 1424256 13743970 ~ 13856397 (-) True AMCG00007323
TU28289 other downstream 2127627 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 3921607 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 4810956 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 6303662 6007640 ~ 6014169 (-) False AMCG00007173
TU27087 other downstream 6497547 5816809 ~ 5820284 (-) True G21632
TU28633 other upstream 1031803 13351517 ~ 13352073 (-) True G22838
TU28749 other upstream 1625929 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 4001283 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 4001323 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 4210460 16530174 ~ 16621905 (-) False AMCG00007375

Expression Profile