RNA id: AMCG00007319


Basic Information

Item Value
RNA id AMCG00007319
length 3411
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00007319
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 13576675 ~ 13614445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cGTAGTATTAGTCGGTAGTACCAGCTCTCATGATGTTTCCGGTGATTTCCAAACGTTTAAATATGAAACGGGATAATCTTTACAATTGTGGTCGTGtataaagaataaacaaaccatttaaatgtgtattaacgTGAGAACCGTTTAAGGACATTTTGAACCATGGCTGTGGAGAGTTTTGTGACCAAGACATTGGAGTTGCTGCAAGTGGAAAGAGAAGAAGAGATTGAAGAAACAAGGACATGGCAGGAAAGTGTTTCTCTGAAGGAGCTGCAACGCAAAGGAGTGTGTCTGCTTAAACTTCAAATAGGAAGCCAAAGGACAGGCTTATATGGGCGCCTTGTTGTTATATTTGAACCAAGAAAATATGATGTGACTGCATTATTGCCAAGCAACAGCATTGGGCCAGGGGACATAGTGGGTTTGTACGATTCCCAAGGCATTGGCCAGTCCTCTCAGGTTGCTACTGGTGTAGTAACACGAATCACGCAGAGTGCTCTTTCTGTGGCTTTTGATGAAACTCAAGATGGACTGAACTTGGCAGGAGAGTCGCACttcaatatattaaaactgGCAAATGATGTCACCTACAAAAGACTGAAAAAtgctTTGAATTCACTGAATCACTACAGCTCTGGTCCAGCTTCCAGTCTAATAGGTGTCATGTTTGGTTATTCAGAGCCAAGTCCACCACTGCAACAAAATAAAATAGACTTCTGCAATAGTGTCCTGGATGACTCCCAGAAAGAAGCGGTTTCTTTTGCCTTGACACAGAGGGAGGTGGCTATTATACATGGGCCCCCAGGGACtgggaaaacaacaactgtaGTTGAAGTGATCCTGCAAGCTATAAGACAAAACTTAAAGattcttTGCTGTGCCCCCTCTAATGTTGCTGTGGATAACCTAGTTGAACGCCTAGCAAGACATAAAGCAAAAGTCCTGCGTCTCGGACACCCTGCCCGTCTCTTGGAGTCCATACAGAAACATTCTCTTGATGCTGTACTGGCACACAGTGACAACACTCACATCATTGGGGACATCAGAAAAGATATCGATCAGGCTTTTgtaaaaattaagaaatcacATGATAAGGGAGATCGGAGCCATTTGAGAGCTGAGATTAAGGAGCTGCGAAGAGAGCTGAAACAAAGAGAAGAGATGGCCATAACGCAGATCCTGAAATCTGCTGACATTGTTTTGGCAACTAATACTGgTGCCAGTGAAGATGGTCCTCTAAAGTTTCTTGCAGGAGACCACTTTGATGTGGTTGTGATTGACGAGTGTGCCCAAGCCCTTGAGAGCAGCTGCTGGATTGCATTGCTCAAGGCACCCAAGTGTATCCTGGCTGGAGACTACAAACAACTTCCTCCCACCATAAAATCACAGAAAGCTGCAGCCAAAGGTCTCTCCCTGAGTCTGATGGAGAGACTGATTCAGACGTATGGGGACACAGTTGTGAGGATGCTCACAGTGCAGTACCGGATGAACAGCGCAATAATGCAGTGGGCCTCCGATGAGATGTACGGTGGTAAACTTACTGCCCATTGCTCAGTGGAGGGGCACCTGTTAAAGGATCTCTCAGGCATGAAAGCCACTGAAGATACCTCCATCCCTCTGCTGCTCATTGACACTGCGGGCTGTGGGTTATTTGAAatggaggatgaggatgagCAATCCAAAGGCAATCAAGGAGAGGCTGATATTGTGGCACTACATATAAACAGTCTGACAGAGGCTGGTATCAAAGCCAAGGATATAGCTGTCATTGCTCCTTATAATCTTCAGGTGGATATGCTGAGACAGCAGCTTTCTCTAAAGCATCCTGATCTTGAAATTAAGTCTGTGGACGGCTTccaaggaagagagaaagaggcagTAGTGCTGTCATTAGTCAGATCGAATAGAAAAGGGGAAGTTGGATTTCTGGCTGAGGACAGGAGAATCAATGTGGCTGTGACCCGTGCTAGACGCCATCTGACAGTGGTGTGTGACACACAAACCGTTCGCCACCACAACTTCCTCAAGTCTCTGGTGGACTACATGTCTGTGCAAGGAGAGGTACGGTCAGCCTTTGAGTACCTGGAGGACATTGTGCCCCAGAATTATACCCACGAACCTTCTCAAGACAAGCAGAAAGACCCGGTAAAAGACAAAGAATTCACAGGCTCTTCTTCAGCCAAGAAGGAAAGTAagcagaaaggaaaaagaaaggaaatgttttgtaaaacgACACAGGACCCTAAGAACAAATTGATGAACAGTATGGAGGCAGCAAAACCTATTCGTAAACATGAAAAGGATGAAGGAACTGCAGAAGGaggaaaagtgaaaaacaactATGAAGAACTGAAGGGAAAGATACTTGATTTTTTGAAAGATACCAAAAAAGCAAAGTTGGATTTTCCTTCTTCCTTGACCTCTCATGACCGCCTATTAGTGCACGAGATCTCAGAGGAGCTTGGTTTAAAACATGAGAGTACAggagagggaaaagacaggcaTGTTACTGTCTCCAGAGCAGAGCATGCATGTCTACCGGAGGGGCCATGTATACAGAAACAGGCATATGAGGCTAAGGATTGTGGTGTCTTGTCCTCTGATAAACTTACCaaacagaagagagagaaggaaccCCAAAAGCAGGCTTCAAATGTTCCTCAGTTGGATCTGAAGGAGCTACACTTGCAACGAATGCAGCGAGAGCAAGCAAAAAGGGAAGAGAAGATGCCGCAAAACACAGGAAAGGGTGCTGATGCTCTAGTTCAATCTGCAAAGAAATCAAAAAACACCACTAAAGgAAAGCACCACTCTAATGGAGACATTGCTGCCGTAgcggctgctgctgatgatgatttTGACAAACTCATAGATGCTGTTGTGAAGGCAGAAAGTGTCTGTGGGTTTTCCAAGTGTAAAGCCAGTGTTTTGACACTGGGACAGCTGTGCCCTCACTGTAACAAGCGCTACTGTCTGAGTCACCATATCCCTGAGGTTCATGGATGTGGTGACAAGGCTAAGGCTCAGGCTCGTATGAGGATCAGCAAGGAAGGGGTCCTTTACGCGGGCAGTGGACAAAAGGACAAGTCTGTGGACCCAGCCAAGAAGGCCTATCTGCACAGGAAACTCGATAAGAAACTAGGAGATCTAGcaaatcaaagaaaaactaaaaagaaagagacagagaagtgaatgactttttaatttaaaattaaaaatctcttACACAAAACTCATATTTGCACAGTATTGAGGGGCATGTAGATGTTTCTGTGTAGAATGTATGTACAAATTAAACAGTTTTGAGATGGCtgtaataatatacacatatataaatatatataaaaaataaagacttttgTGAGTACAGCATTTCCAAGCCTTGTCttgtattacaattttaagTTTGTG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28614 lncRNA downstream 582739 12993677 ~ 12993936 (-) True G22819
TU28586 lncRNA downstream 1483199 12081746 ~ 12093476 (-) True G22794
TU28576 lncRNA downstream 1669181 11907274 ~ 11907494 (-) True G22785
TU28570 lncRNA downstream 1685034 11891388 ~ 11891641 (-) True G22779
TU28569 lncRNA downstream 1685688 11890669 ~ 11890987 (-) True G22778
TU28712 lncRNA upstream 15800 13630245 ~ 13631291 (-) True G22901
TU28713 lncRNA upstream 32086 13646531 ~ 13649777 (-) True G22902
TU28752 lncRNA upstream 417904 14032349 ~ 14033212 (-) False AMCG00007326
TU28762 lncRNA upstream 446325 14060770 ~ 14061129 (-) True G22941
TU28763 lncRNA upstream 447289 14061734 ~ 14062135 (-) True G22942
AMCG00007320 mRNA downstream 182249 13392900 ~ 13394426 (-) True AMCG00007320
AMCG00007316 mRNA downstream 311713 13062794 ~ 13264962 (-) True AMCG00007316
AMCG00007315 mRNA downstream 1256961 12317831 ~ 12319714 (-) True AMCG00007315
AMCG00007313 mRNA downstream 1269619 12263894 ~ 12307056 (-) True AMCG00007313
AMCG00007314 mRNA downstream 1312798 12262833 ~ 12263877 (-) True AMCG00007314
AMCG00007318 mRNA upstream 63536 13677981 ~ 13687064 (-) True AMCG00007318
AMCG00007323 mRNA upstream 129525 13743970 ~ 13856397 (-) True AMCG00007323
AMCG00007325 mRNA upstream 280440 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007324 mRNA upstream 324895 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007326 mRNA upstream 366929 13981374 ~ 14033164 (-) True AMCG00007326
TU28633 other downstream 224602 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 3386471 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 5180451 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6069800 7499447 ~ 7506875 (-) True G21942
TU27173 other downstream 7562506 6007640 ~ 6014169 (-) False AMCG00007173
TU28749 other upstream 331198 13945643 ~ 13946065 (-) True G22931
TU29239 other upstream 2706552 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 2706592 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2915729 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 4441025 18055470 ~ 18058949 (-) True G23661

Expression Profile