RNA id: AMCG00007333


Basic Information

Item Value
RNA id AMCG00007333
length 2977
RNA type mRNA
GC content 0.39
exon number 9
gene id AMCG00007333
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14407144 ~ 14425504 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAAATCAGAGACAtTCTGGACCATGGTCCGACACAACAGCAGTATAATGAGCATTCCATCAATTGCAAGTATAGAGAGCCAGTTGCCTGCTGCTTGGAGCCCACACTACACCAGCACAGATGTGTCCACTACAGTCCCAGGTTACCCTGGCCGACTGTTGCAGCAGGAGATCCACCCTCAGTTCTGGTCCAAGTTCCAAGTGTGGGAGTGGTTGCAGCAGACACTGGATGTGAACCAAATAGATGCCACAAGCATTCCTTTCCAGAACTTTGATATTGATGGCAGGCAGTTGTGTACCATGAGTTATCAGGATTTCACCAGGGCCGCGGGCAGTGTGGGCCCACTGCTCTTCCAGAGTCTCACAGACATCAAGTGGAATGGTCAGTATGGCAGTGAGCTCTTTGCACCGCTGGACGTTAAGACAGAAGTTGATGAGTTTTCATGTTCCATCCTCCCATTCAAGGAGGAGAGTTGCTACTACAACTGTTCAAATGCagATTTTTTTGACATCAAGACACCCTTTCAGCCTTCAATTGCTATAACAACAGTTCCTTCTAGTCCAGAGGCTAAGAGGCAGCACAGTCGACCTCAGTCTGCACAGGTGAAAAAACACAATCCTCGAGGGACACACCTGTGGGAGTTCATCAGAGATATCTTGTTGAATCCAGAGAGAAATCCTGGTCTGATTAAGTGGGAGGACAGGTCTGAGGGTGTGTTCCGCTTCCTCAAATCAGAAGCTGTGGCCCAGCTCTggggcaagaaaaaaaacaacagcagcatgaCCTATGAGAAACTGAGTCGTGCTATGAGATACTATTATAAACGGGAGATCTTAGAACGTGTGGATGGAAGGAGACTTGTCTACAAATTTGGGAGAAATGCCCGGGGCTGGAAGGAATCAGAAAAGTGATTGGAAACTTTTGAATTCAGCACCATGAAGGGAAGACTTTAATTTATAAGACCATTTCTATGCAGCTATCTTTTACTATtaagtcttttttgttttaatttgctgttgtagtattttgtgtagtttgtgcttcatgtaaaatatatacttttttatcaGATAAAAGCTTTTGGTGTGATGAAATTTCATGGTGGATATTCAAATAGTTTGAATGTGCTGATAACTATCTAACACACAATGGAAATAAGGACCAATAGAAGTCACATATGGACCTGTCTTACCAATGTACCATTTCTCAAAGTTTTCACTGTTGTGTATTTTCATTGACAACTAGATTTTCTGGTCTGCTATGCTGTCTGCTAACAGAAGCAGCAAACCTGCAAACCTGCTCACAAAGGAAATGCGTGTGTTTCAGTTTGTAGACTGATTGAAACAAGACACACCTAAGCTATGTCAAAAAGATAGAATGCAATGTCTATGGGATCCCATTGAAATTAAGCTTTCAATGATGGAGTGATGTCTACATAGGCTTCAAtgataatacaaacaataataaaaataggaGGTGCTGCGTTTGAAAATGTGCTAAcgtacatataataataataataataataataataataataataataataatgattatcaACTCCAGtcaaaactgtttaaatgaCAGATTTAAGACAATATCCAAACAGATTACGTGAATTATCTGAAGAGGTATATTTACCAACTGAAAACGATCTACACGACCTTCCAGACCCTTCAGCTATCCTGTGCACCTCTAGATAGTAGACGTGCAGTCAAGAAGACTGTTTCAAAGTTTCTTATATGAATTGTGAGAAGAGAAGAATTGAGTGgatcatttgtttttgaaatcaattaatcTACATTCCTAATAATCTGGTTGCtttgtagtttaatttaaatcaggtGGGAACTTTTATGTACCAATATATGCTGAACAAGTCAGCACACTGAACTGGAGGAGGTTTCACCATGTCTGCTAATTCCTGTGGAGTCAGTCAATAGAAAAATCCAGTTTTCTAGTAACTCcaggagagaaacagaaagtaCGTGTATAAATAGGGTAGACAGTGGAGGTATATAGCGTGAATCCTCAATAGTGATGCACCTGTTACCATCACCTTTGTAACCAATTGAGAATAATCTTTGGGCATGATTATTTGCataaattcagaaataaaatgatcagTAACATCATATTTTCTAGTAACATTACATACAAGCAATATGTCTCCCATTATCAATACAACACCCTTGGTTCAGCATAGCATACCATATCCTACCAGGACAAACGCCAGGGAGTTGTCTCTTCCACCTATGGGAGTTGCAATGTCATACCTTAATAAAGAAGTTAATGAGACAGGTAAAGGTAAACaattagaacattttaatttcacgCATTTCACCCATCCATCTAGTTTAACCAATATCATCTAAAttccagaaaacacaaaaacatttggtATTTCTTGTAATTGCTTGAGACATattcaaaatgtgcaaaataatcattaaatgcATTGCACATTGCAGTTATGCATCATTACACCTTCCATACCAAAATATTTGTCAATACCCACAGGATTAAGTTGCATTACACATTGCATTACACGATAGTGTTCTTGAATGTCACAATTTTCAGTTTGGACAGCGTCACTATATGTACTCCCTTCCTTGACTGGGACCCCTGGAAGTTCAGTATGTGCAGCTGTTAGCACTCCCAGGGTCGCAGTCATTAGACATAAGAAAGTCAGGCGCTCCATCTGAAATGACCAAGTGCAGTATTTATTCTTTgttgacacacacactgggccTTCTTAAACTAATCAATGTGAAACCATTTTACCTACTGCTTTCTCACTTTGAAGATCTTAAGTGTATACATGTGGCACCGACATTTGTCCTCTCCAATGACCACTCCAGCAAGAGAGAGCCCCTTGAAGTTGCACCCCCCACAAATGGCACAGACAGTGAATTATATCTAATGTatttgtgctacgtttgtgccAGTTTATGccattgaaataaacatttg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K17102 EHF; ETS homologous factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28799 lncRNA downstream 217456 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 341846 14063495 ~ 14065298 (-) True G22943
TU28763 lncRNA downstream 345009 14061734 ~ 14062135 (-) True G22942
TU28762 lncRNA downstream 346015 14060770 ~ 14061129 (-) True G22941
TU28752 lncRNA downstream 373932 14032349 ~ 14033212 (-) False AMCG00007326
TU28842 lncRNA upstream 53092 14478596 ~ 14480199 (-) True G23011
TU28944 lncRNA upstream 598737 15024241 ~ 15024745 (-) True G23101
TU28948 lncRNA upstream 705884 15131388 ~ 15131598 (-) True G23105
TU29111 lncRNA upstream 1309121 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 1642579 16068083 ~ 16069464 (-) True G23250
AMCG00007331 mRNA downstream 80644 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 132710 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007326 mRNA downstream 373980 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007324 mRNA downstream 466473 13939340 ~ 13940671 (-) True AMCG00007324
AMCG00007325 mRNA downstream 495296 13894885 ~ 13911848 (-) True AMCG00007325
AMCG00007340 mRNA upstream 510095 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007344 mRNA upstream 726924 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007347 mRNA upstream 750682 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007346 mRNA upstream 763784 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 795593 15221097 ~ 15277958 (-) True AMCG00007348
TU28749 other downstream 461079 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1055071 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4216940 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6010920 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 6900269 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1895493 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1895533 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 2104670 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 3629966 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 4350856 18776360 ~ 18777638 (-) True G23838

Expression Profile