RNA id: TU28829



Basic Information


Item Value
RNA id TU28829
length 372
RNA type TUCP
GC content 0.50
exon number 3
gene id AMCG00007337
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14478673 ~ 14489692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTATAAAGAGCGCTTTAGTTGCTCGTCTGTAACCACATCGCTTGGCAAGACTGACTGCTTCTTCCGTTGCAGAGAAGTACCAGCCGAGCTATGGATCCCACTATCGGATACACGCAGAACAAGGCCTATGGACCCGTCACCGTGGTGGAGATTGAGCAGCAGCTTCCTGTGAAAGATCACATCATCTGGTCTATCTTCAACTTCAGCTATCTCAACTGCTGCTGTCTGGGACTGGTGGCTTTTCTTTATTCCATAAAAGCCAGAGACCAGAAAGTCGTCAGGAACCTGAACCAAGCCAAACACTATGGGAGGCTGTCCCGGAATTTCAACATTGCTGCCACCGTTCTCTCCCGGAATCTCAACATTGCTGCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28809 lncRNA upstream 188048 14286133 ~ 14290625 (+) True G22979
TU28789 lncRNA upstream 263617 14176735 ~ 14215056 (+) False G22962
TU28788 lncRNA upstream 263617 14210153 ~ 14215056 (+) True G22962
TU28765 lncRNA upstream 413029 14065371 ~ 14065644 (+) True G22944
TU28761 lncRNA upstream 413465 14064950 ~ 14065208 (+) True G22940
TU28943 lncRNA downstream 534534 15024226 ~ 15024688 (+) True G23100
TU28981 lncRNA downstream 727484 15217176 ~ 15309751 (+) True G23130
TU28987 lncRNA downstream 787019 15276711 ~ 15279710 (+) False AMCG00007352
TU29003 lncRNA downstream 882314 15372006 ~ 15379965 (+) False AMCG00007350
TU29023 lncRNA downstream 1180250 15669942 ~ 15753760 (+) True G23154
AMCG00007335 mRNA upstream 4980 14439326 ~ 14473693 (+) True AMCG00007335
AMCG00007332 mRNA upstream 94754 14365708 ~ 14383919 (+) True AMCG00007332
AMCG00007329 mRNA upstream 293099 14158184 ~ 14185574 (+) True AMCG00007329
AMCG00007327 mRNA upstream 414591 14049393 ~ 14064082 (+) True AMCG00007327
AMCG00007328 mRNA upstream 496820 13975305 ~ 13981853 (+) True AMCG00007328
AMCG00007336 mRNA downstream 10163 14499855 ~ 14503459 (+) True AMCG00007336
AMCG00007334 mRNA downstream 28162 14517854 ~ 14522839 (+) True AMCG00007334
AMCG00007339 mRNA downstream 55203 14544895 ~ 14572261 (+) True AMCG00007339
AMCG00007338 mRNA downstream 141070 14630762 ~ 14660061 (+) True AMCG00007338
AMCG00007341 mRNA downstream 171986 14661678 ~ 14893147 (+) True AMCG00007341
TU28420 other upstream 3865569 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 4978945 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 5767362 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 6082431 8367436 ~ 8396242 (+) True AMCG00007243
TU27445 other upstream 7099727 7374323 ~ 7378946 (+) True G21891
TU28988 other downstream 796805 15286497 ~ 15287960 (+) False AMCG00007352
TU29675 other downstream 3709076 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 3717386 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 3800416 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 4078077 18567769 ~ 18570464 (+) False AMCG00007433

Expression Profile