RNA id: AMCG00007344


Basic Information

Item Value
RNA id AMCG00007344
length 1120
RNA type mRNA
GC content 0.54
exon number 2
gene id AMCG00007344
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15152428 ~ 15153708 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAGCACTACTGTCGCAGCCGCGCACATCACGCAAGGTGCCTACCCCTTCGGACTGGAGGGCCGCGGCGTCCTCTCCATGCAGACCACGCTGGAGTGCGGCGGGGCTGTCGCCGCCGCTGCCGGGGTCCATCACCCAGGCAAGAGCAAAGTGCTGAAGAGACAGCGCTCCAGCTCGCCCGAGCTGCTCAGGTGCAAGAGGAGACTGAGCTTCAATGGGCTGGGCTACACCATCCCGCAGCAGCAGCCTGCCGCCGTGGCCAGGCGCAACGAGAGGGAGAGGAACCGAGTCAAGCAGGTCAACATGGGCTTCCAGACCCTGCGCCAGCATGTGCCCAACGGGGCGGCCAACAAGAAAATGAGCAAAGTGGAGACTCTCAGGTCTGCGGTCGAGTACATCCGagccctgcagcagctcctggaCGAGCACGACGCCGTGTCAGCGGCTTTCCAGTGCGGGGTGCCGTCCCCCACCCTGTCAAACAGCTACTCTGCCGACCCCGGCTCCCCACACTCCACTTACTCCTCAGACGAGGGCAGTTACGAGCATCTCAGTTCAGAAGAGCAGGAGCTCCTGGATTTCACCACCTGGTGCACGCTACCGAAACTGGAGAAAGCAACCGGAGTACCTCTTGCCACCGGTGACACGTTACGGGAGAAAGGATTTAAAACTCCCAGTGGTCACTTCAGTGGTCCAGCTCGACTGGACCTGCCGAACAAACTTCCAAGGGAAAACGAAAAGCCTGTGGACTTCGtatgtttcttttgttaaaCTAAGTGCAATTATATGAACCGGCGACCAGGAAGATTAGCCACTACTTTTGCAGTGGCGTGAATGTGGTACCGGGACAGCTCAAGTAGTCGATGCCTATACCAAGGCTGCTGAGTGAAGCGATAAGGACTCAAATCAGTACTGCCACTTTTTAGATAGCTCTTGCACCCTCGGGTTTGCTGGGAAAATCAGTGCGAGCATGATGCTTCCTATTCCTAAAGTTGCGATTTTGAATTTGTGTACATCTTCTATTTTGTTTATGGCATGACATGGCATTGAATTATATGAAGACTTATTTTTGTAtagaaatgataaaacaaaaacaaagcaaaagttTCTCGGGAAC

Function

GO:

id name namespace
GO:0021575 hindbrain morphogenesis biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09067 ASCL; achaete-scute complex protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 20830 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 127683 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 672229 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 962740 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1087130 14063495 ~ 14065298 (-) True G22943
TU29111 lncRNA upstream 580917 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 914375 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1083753 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 1137833 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 1224810 16378518 ~ 16380291 (-) True G23344
AMCG00007340 mRNA downstream 214901 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007333 mRNA downstream 726924 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 825928 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 877994 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007326 mRNA downstream 1119264 13981374 ~ 14033164 (-) True AMCG00007326
AMCG00007347 mRNA upstream 22478 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007346 mRNA upstream 35580 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 67389 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007349 mRNA upstream 134632 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007353 mRNA upstream 223910 15377618 ~ 15385002 (-) True AMCG00007353
TU28749 other downstream 1206363 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1800355 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4962224 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6756204 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7645553 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1167289 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1167329 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1376466 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2901762 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3622652 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066628 True 1273 mRNA 0.50 2 NC_007118.7 49715750 ~ 49717195 (+)