RNA id: AMCG00007346


Basic Information

Item Value
RNA id AMCG00007346
length 7809
RNA type mRNA
GC content 0.45
exon number 18
gene id AMCG00007346
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15189288 ~ 15210018 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTCACCGTGATTCGGGCCCGCTAGGCCGTTTCCGCCGCTGTCCGCAGCCGGCAGTGTCACTCAAGGCACAGACCGTGGACTTCAAAACAACCGAAATAAACCTCTCAGCCGCTGCGGCCATGGACGACGAAGACAGCCAGGATGAGCTGATCAACAGGAACGCATCACTCGGAAAAGGCAAAAGACAGAGTTTGTCTGTGCTCAGTGATGAAGAAGAGTACAGCGATGAAGAGGGAGAGGAATCTGAGGAAGAAGAGACGgacagtgaggaggaggagggggaggaagaggatgaTGACGGAGAAATCATTGACGAAGAGGAGGAAGACGATAGTGATGAGGCCGAAGACGACGATGCTGAGAAGCAGTTGGGAGGGACTCCTGGCGGGGCCGCCTCCAGCATGTTGGACCTCAGCTCAGATGAGGATTCGGAGAAATGCCCTATCTGTCTCAACACCTTCCAAGAGCAGGCTGTGGGAACTCCAGAGAACTGTGAACACTTTTTCTGTCTGGACTGCATCTTAGAGTGGTCCAATAATGCAAATTCCTGCCCTGTGGATCGCAAAGAGTACAACAACATCTGCCTAAGGTCTTGTTATGGAGGGACAATCCAAAAAAAGATCTCCGTACAGAAGCCCAATAAGaacaaggaggaggaggtggaggaccAGACCAACTGCGAGGTGTGTGGCAGGAGTGACCGAGAAGACCGGCTGCTCCTGTGTGACGGCTGTGACGCAGGGTACCATATGGAATGCCTCAACCCTCCATTGGACGCCGTTCCTGTTGAAGAGTGGTTTTGCCCCGAGTGCGTGGCAAATCAACCTGCTCGAGCGGCCTCGGCGGAGGAGGTGAGCGAGGAGGAGGTGGCGGCACTGATGGCCGACGCGGTGCCCACAACCAGCCGCCTGCGCAACACCACTGGGCCAACCCGCGCCATCGCCCGCACGCAGCAGAGTGAGAGAGTCCGCGCCAATGTCAATCGGAACCGCATCACACAGGCACGCACCATACAGCACGTACCCAGGTACTTGATGGAGTCCTCCTTGCTTGATGAAACGATTAACTCGGTAGTTGCAGGCCTGAGTACAGCAGTGTACATTCGGCCCCTAACACCTCGGACAGGAACCACTAGGAGACGGCGCATAGTAAGGCGAAGGAGAACAAAGAGTAAGAAGCCACGATCAAAAACCTCTGCTGGAGCAAAGTCTACAAGCACTGGGAAGGGGACTAGAAGACGCAAGCGCCGGTTTAAGAAGAGAAGATCAATGAAGAAACTAGTGAAAAAAGACCCAACGTCTCGTTCCCGTATTGCTAAGAACCTGGGAATTGGCAAGCCAGTCCGCGGCGTCTCCATACCGTCTGTGTATCGGCCTGTGGACCCTAGCCTGGGCAGCATGAGAGCAGATATCGGAGCTGCTTCTCTTTCAGTCTATGGAGATCCTTTTGACTTGGACCCCTTTGATGACGGTAGGAATGACAACACCGAGCGGTCTTCAAGCCCGATGTCCCTGGTTGAAGTTAAGAGAAAAGGACTCTCTCGGTCCGCTCTCCGATCCCACCAGCCCGTAGCAAGACCCATCTCAGTGGGGCTTCCCAGTATTCCTGAGGCTGAGGTTATTGCTGAGGCAGCACCTGTTCCAGACCTGCTGGGCAGCATCCTCTCAGGACAGAGCATCTTAATGATGGACAGTGCTGACGTTGTCATCAACAGAGATGGGTCTTTGAAAGCTATTAAACCAGTTGCCATATCATCCAAGACGAGCGTTTCTAGTGACTGTAATACACACTCGGCTACAGAGATTCATGCCGGGACTTCATCTTGCCCCCACACAAGTGCCTTTATCTTGAATGGAGACTTTgaatcatcatcaccatcatcatcatcatcttcatcttccCACACTGTTACTGCAAGACTCCCTTCACTCAACCCTTTGGGCCCAACTGTCTCCCACTCTTCGCCAGTAACTCTAAAGTCATCCAATCAGGTGCCATTATCTCTTGATGTGCGACCAACCACGTCTGGAGCCACTACAGTCAGGCCCCATCTCTCTGTGCTCCCTAGACCTAACGCACTAGCCAGCCTTGCAGGCAATAGCAGCAAAATTAGTGGCAGTACTGCATCCGTACCACATGTGCAGTTTTCAAAGAAGCGCACAGACAGCAACTCTGATTCACGCTTCAAAAGTGCCACAGCACCAGTTAAAAAGGCCCCTCCAAAACCAGTGTGGGTTGATGTGTCTGAACTCCCTAGGATACCAAAGATCAAAAGAGAGAACCCTTCTAACTCTTGTTCAAGTGACAGCAGAAACAGTGGAATACCAGATTCTTGCATGAATAGCCTAACAGGTAATGGGGGCAGGCAGCAGTCCAAAGATCATGGGACATTAAGAAGTGAGCAGAGTGGTGAAAGGCAGAGGCACTGCCATGGTGGCTCCTCTTCCACCTCTGGCTCCTCCATCACCTCGCCGACCGGTCCCAGTCCCTCAACTGTAAGCTTTCGCATAAGTGCCAGTGGAAATTCGTGGCATGCTAGGAGGCTTGCTCATGGTGGGGCTTTCAGTAACCCTTTAAAGTCCACTGATGACAAATCCTGGCAGAAATATGCTAAAGTCAAACAGACTTTGTCTTCACAGTCAAAGAAGAAGGAGGAACccataaaaagtgaaatatacgATCCTTTCGATCCCACCGGCTCCGATTCAAGTTCTTCTGAAAGCCCCTCAGATATATTTCAGTCCACAAACGTGGGCTCGGAAAGTGAATCCATGAGCCACTGTGTCCAGGATGCAGCGCGCAAAGAGCAAGAATCGCAGTCTTCTAGCTGGGATTGTTTTGAAGAGGATATAAAAGATGTTGGACACCACATTAATGTTGAAAAGCCGCTGCATTGTACTCAGGAAAAAGATGTAGAGGGAGGATCCAGTTTAGATGAACAGAAGGAATTAATTTGTACCAAGGACTTATTAGCTCATGGGGATAGTTTACAGAATACATGTAAAACTGAGAGCACAGTCGGTGAGCCTTTGTCTTCTGAAGAACAGGGCACTTCTACTAGTAAGAGAATTGATCTGTCAGAGAATGAATTGAACACACTACCTCAGAAGAATGCCTGTTCAAGATCCAGCTCAACATCCAGCTCTCACAGCGAGAAGAAAattaaagtggaaaaaaaattggAGCCCAAAGAAAGAACACAGAGGTCAGACTCTACATCAGGGTCAGGCTCCCGTTCTGCTACTGACAAGAAAGTGAGCTCTGCGGCGGGGGGGCGGAGGACTTCTGATGAGCATGGCCGGTCCAGCAGTTCAGAAGCCGCGAGGATGAAGGCGGCCAGAATTAAAAGCAGGGAGAAGAAGCCACCACGTTCCAGAtcgagagagaggaagaggtcTCGATCCCGTTCACGCAGCTCCTCGTCTGAGCTGTCTGAGCGATGGAAGAGGAAGAAAAGGCGGTCCAGATCGAAAGACAGGGGGCGGTCTCACTCCAGCAGCTTAGAAAGAGCCAAAAAGAAGAAACTGAAGAAGGAAAGAAGTCACGAAAGACATGAAAGCAAAGGCAGCATGCAGAGACCGAAGGACAAGAAGCATAGGCATTCTCGGTCTAGGTCCAGatccagagagaggaggaaagacCGATCAAGGTCACGATCAACATCGGGGTCAAAAGAGGTGGGCAACAGGTGGGGATCCAAAGAAAGAAGGAGACCAGGATCGAGATCCGGAtccagagaaaagaaaaacgaaGTTCATGGACAAACGTCCCAGTCTGTAGAAAAGAAAGGTGCAAAAGACTCTAAGAAACCAATAAAGCTTTCTATAGCATCTTTCAAAGACCATCAACAAGCAAAGGAAAAGTCTCCTCCAGTAGTGTCTGTGAAGGAGGAGCCTGGGAGTACAAACGCAGGCACCGAACCCGGCCTTAAAAacgggaggaaaaaaaatgatgagAAGATTACAGAGAGCAAAATGGATATCATTTTGGAGGCCAAGATTAAAACTGAGCCTACTTGGTTAGAAGAATCTTCATGTGAGGACCAGGTCTTGGTCACTGTAAAAGAGGAGGCTGTTTCTGCCATAGCCACTGTTGGGGAAAAACACTGTGAGTCTAAGCTAGCTGGTGCTTCTCCTGGGAATCCTCCCGGGGACGCTTTCCAGGAAACAGAATCTATTCTCAAAGTGGAAGACTCTGATGAAGAGATCAATGTAGACTACATTCTGGACAGCTTAGACTTAATAAAGAGTGAAGAACCAGAACCGACAAAGGTCAGTGAGAGTGCAGGGGATCTTAACAAATCTGTAAAGCAGGAAGATGCTCCAGTCAAACAGGAGGCCGAACCCTTTGCCGCCGTGACTGTCACCTCCAAATCCAAGGCCCCTGTGAAGAGAGTGACCTGGAAACTGCAGGAAGCAGATTTACCTTCATCAGGAAAGACTGGAGACGTTTCTTCATATAAACTGCAGCAAAGTAGCAAGGATGGATCCTGGAAGCCGAGGGATCCCATCCAAAATCAGGACTTCTCTCAATCTGCACCGCTGGTCGCTCTAGTCGGTGTGGGGTCTCCCTCTTACGGGCCAGTGAGTGAGCCCACTGCCCAGTATATACTGCAGGGGAACCTGGCCACTGCAGTGGCCACAGCAGGCAGCCAGAACTTTCCTCCAGGGTCAGAACCGAAGACCGCCGTGCCAGACCTGAGACCACAAACCCAAGCTGCTGGGCAGGAGGACCTGAAGATTTCTGATGGCATTCATGATGTGGACAGGTTGCAAAACGATAAATACATGATGAAACTTCATATGCAAGAAAGAGCAGTTGAAGAAGTGAAATTGGCTATTAAGCCTTTTTACCAGAAGAGAGAGATCACCAAGGAGGAGTATAAAGACATTCTAAGGAAAGCTGTTCAGAAGGTTTGTCACAGCAAGAGTGGGGAGATCAACCCGGTCAAAGTGGCTAACCTGGTCAGGGCGTACGTTGACAAGTACAAGCATGCCAGGAAACACAAAAGTGAGCCAGAGGGATCGAATAAGGAAGCTGTGAGGACCAAAGATCTTGCAAAGTCCTGAAGACCATGAATTTCAATCAGTGGGGAAAGTAGAGCTACCATCTGTCaaaaatcctttcttttttatagtAATGTACAACTTGTAGCAACACAAGTGTTTTGGACAGCTGTGTTCCAgtatgtcattttttaattgtttctagAATCCTTTACTGAGAATGAACAATGGGGAGGaatgcatttgaatgtttttccgtttgttttttggggttgtgttcttgttttttttaacaggtgCTAATTTAAGATTCACATAATTTTGAAAATCAGTGCTTTTGTAAACTGCTTGAGTCTGCATCCTATTCCACATGTTTGATCCCTCCCACAAaggcctgcctgcctgcctgcctgcctgcctgcatcGCAGCAGCATCTCACTGCTTGGTTGAACAGCTGTCCCATCATGTCAGTAGCTCACTCTTTTGACCCCTTTTAGTTTGCGTGAACTGGTCATTGCGttgataaaaatgtacatttaagcACACTTCATTGCATCTGCATCCAAAGTGGTATGAATCATTTCATTTAAGCTGATATTCAGGAGAAGAAATCACAaaaattaacacttttaaaagttgTAGGATTCAACTAAATAACTAGATCCCACTATCTTAATTTGGGCAACCTTCACTCGCAAATTCAGGTCTGTCCCCTGTTGCTCTTACACTTTTTATATTGccttgttttggtgttttttctgtggttgtttCATGTCCTGTCAACCAGCATTTCAAGATTCAATCACCATTCATTTCTCTTAAATGTAATGCCTTTCTTGAACCACCAAATGTGATCAGTTTCCTTCTTCTTGCAATAGGTGAAACCCCTTCTATCTGGTTCACTGGGGAATTAGCTTTGAAAGTGCTATACTATGAGGTCCAGGATCAAGAAAGGAAGTTCATGTCTAACCTTATATTGAAAGTAATATAGTAATGTAATCCAATATAGAAAAAGACCCCAGTTAAATGCATTGGGTAGGTAGTGACCATATTTATTTGGTCTTAATTAGTAGGAGGTTTTGAGTTGGGTTCCAATTTCTCTACAGTTTTTCAAAGGAATGCAACAAAACAAGCGGGAGAAGGTGGTCAAAAGTGACCAAATAGTTGCTTTTTCACTTCAGAACATCAGAATTAATAAAAGGGGAATGCTTTGAAAActgcatttccaaaaatgttGGTTTAATGGACAATTGTCAAATTAAGTTACTAATTTGACCAAATGAAAACGATATTGGTCCTAATTCCCTTTTACAATACGATTAATTTTCTCATACATTTAGTATTATGTAGaactttcaaaactgaaaaccatTCTGTAAACTATCTTAAAACTCATTGCATAAAATACACCTGTTGATTCTGACGAGATACATGATGTATATGGTGTTTTCACTTCTTTTTCTTCGTACTAAAATAGTAGACGTGATTTTGGGGACTTTAGCAGAAGCAGAATCATTGGGTCCCCGATTACTTTCCTTTATTTAACACTCAAAGCTGTTCAGATCAGACAGAGGCCTTTATATCAATAAGATATAGGGTTCAAATCCAAAATAATCTATTTCATCCTTAAGGACACAACACAACttccaaaagctttttttcttgATTAGTCCACTAAATTGCAGTTTTAGCAGCATTAACCTATGGAAACAGAAACGTGAAACTGAAAGACATTTTGAATACTTTCGAGAGATTAAGAGGAATTTGGATTTCCGTATCACAGGCCTGCTATGTGCCGCATTTGTTTCAGTTGTGGACTTTCTTTGCAGGTGTGTCATggattgatttttgttttgttttgtttgtttgctttgttattaCTTGAAAATCATTCACCTTGGAAATGGGGGTCACAGGCTGTAATTTGAATTGTGCTTCTCTGAATACCTTGATTTTATCGATAATCGTATTAACCATATCGACTATATCCttatttaatgtctgtttaATTGAAGTTCCTTTCCTGGATTTTGGTCTGTAAATAATGTCCTGGGAGGTTGTGAGTGGCCCCAGTTGTTTCCTTATTGGATGACAAACAGTATCTGGTTGTCAAGAATACATGTACAAAGCCCAGAGAGTTCAGGAATTACTGAGAATACGTTCATGTGTTAAGTTGCCCTCATGTGCTTATTTTGTCCACTATGTTGTGAACTGTGTTGAGgcagaattaaaatgttcagaatAAGTGATCAAGGTAGAGTGGGTGTTTTGCtctgaatgttttcttttttctctgcttagtatttcaaataaaagaaGCATGCTTGTTTAAACACAAATGAGCACATCAATGCCCAATTTGGAGGGGGGATGGGAGCAAATTTGTGTTAATTCTCTagtcttctattttttttaacccccccccccccatttatttTGAGATCTCACTGCTCATGAAATGCATaatagaaatgtgaaaaactgaacaaaacaaaaaagtggtttgcaaattaatttttaCCCCCTCTactgtaaagttttttttttctctcaaaaacATCTacagagaaaaatgtttttttttttggtattatgTTGAAGAAACAATTGTGTTCATTATCGGTTGAGCCCTGCCCAGCTGGGGATTGCAAAACTATGATGATCCAGGGATGAATAATGCCTTGATCCAGCCCTAATCTTCGAGTATAAGTCTTGGGTTAATTAATCTTAGGTTAACTGTCCTAATTTAACTGTAATGTTGGAAACTTGAGGTTTCCATTTgagtatttgtaaatatattt

Function

GO: NA

KEGG:

id description
K17586 PHRF1; PHD and RING finger domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 57690 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 164543 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 709089 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 999600 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1123990 14063495 ~ 14065298 (-) True G22943
TU29111 lncRNA upstream 524607 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 858065 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1027443 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 1081523 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 1168500 16378518 ~ 16380291 (-) True G23344
AMCG00007347 mRNA downstream 4308 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007344 mRNA downstream 35580 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007340 mRNA downstream 251761 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007333 mRNA downstream 763784 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 862788 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007348 mRNA upstream 11079 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007349 mRNA upstream 78322 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007353 mRNA upstream 167600 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007359 mRNA upstream 540090 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007358 mRNA upstream 546275 15756293 ~ 15775512 (-) True AMCG00007358
TU28749 other downstream 1243223 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1837215 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4999084 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6793064 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7682413 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1110979 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1111019 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1320156 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2845452 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3566342 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00047870 False 6390 mRNA 0.41 18 NC_007136.7 25508495 ~ 25546368 (+)
grasscarp (Ctenopharyngodon idella) CI01000330_01180674_01200580.mRNA True 5669 mRNA 0.46 16 CI01000330 1180674 ~ 1200921 (+)