RNA id: AMCG00007347


Basic Information

Item Value
RNA id AMCG00007347
length 3176
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00007347
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15176186 ~ 15184980 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCAgTCTTCTACAGGCCAAAATAGCCGATTGgtcaaaaagaaaattgaaagtACTGCCCCAGGAAGTCTTGGAAGACATCAACATTTTCAGCCTTAACCTAGAAAGGAACCGATTTAAAGATGTGAGTGGCATCTCTAAACTGATCAATCTAAAGGAACTCACTTTATCACGCAATGAATTTGTTGAGTTTCCCTCGGAAATCCAGTTTCTGGTCAACCTGGAGAAGCTTTACTTGAACCAGAATAAGATCCAAAGCATCCCTGAAGAAATCTTCCCCAAGCTGCAGAAGTTAGAGCTGCTGAAGCTCAGCACCAACCGCTTGAGCAAACTGCCCACTGACCTCCGCTGCTGCAAGAACCTCCTACACCTCGGACTCTCCCACAACTACCTGAAGGAGCTGACCGAGGCTGTGGTGGGGCTGCCCAGCCTGCGGGAGCTCTATGTGGACAATAACCGTCTTTCCGAGCTTCCTGCCGAGCTTTTCAACAACAAGAGCCTGGTGACTTTCAGGGCAGCCTCCAACCGCCTTCGGGAGCCCCCGGATGAGGTCTGCATCGGGGGGCTGAAGCAGATCCGGAGCTACTTCAAGCAGCTAAAGTTATCCCAGCCGGATTTTGTGCGCAGGGTGAAGACCATGTTCCTGGGCTCCTCCATGGCGGGCAAGTCAACCCTGTGCCGCAGCCTGAAGGACAGACAGCCAGTGATGGTGGACGTCAAGGACCGCACTGTGGGGATTGAGATCAGCGAGGTGCAAATAGAGGGCTTCCGCTTCCTCTTCTGGGACTTTGCTGGCCAGGAAGAGTACTACCTTACCCACCATGTCTTCATCACCCCTCAGGCCCTGGTAATCCTGGTGATCGACCTAGCCAGCTACAATATTGATGACCCGCAGTCATTCAAAGAGAAAGTCAGCTTCTGGATTAATAACGTGATGATGAGAGTTCCTGATTCCGTCATCCTGCCGGTGGGAACTCACATTGACAAGTGTAGAGATGACAGGGAGGTGCAAGAGAAGAAATGCGACATTGGGGACAAAATCAAAGACATGCTGGCGAAGAGGGAACTCATGTTGGATCAACGCAGAAAGAACATCGATGACAAAATCGAGCCAAAGCTGTTTTCTGATCAGTCAAACAAACTTGATCAGGTGGCCAGCTATAGCTTAAAGTGCCTCGACCTTGTTCCCATTGACTGCACAAATTACAAGGATATCGAACAGCTCCAAGAGAAGATTCTGGACTTCGTGCAAGATATTGAGACATTTCCGAATGTAGTGAAAAAGCTCCCTCATATCTACCAAGCAGTGGAGTCCGCAATCGAGGACCTCATTAAAGACAACCAATTTCCTAAGCATGGCATTGTTTCCCTGACCCAACTCTTGACAGACATAAAACAGAAAGTTGGGAAGCTTGATGAAGACGACCTTAAGGGAATCTTGCGCTACCTTCATTACATCGGCATCATAATCATTGTCCGGCTTGACCTGAAGGAGCAGCTGGAGTGCATTCCCCGGGAGCTGCTGTTGACCGAGAACTCCCTGGTCAAGGACAGGAATATGTGGGCGGAGGATTTCCACAGCAAAGCCACTCTCCACAGCACGGCTATGCGGTTGCTGGTAAAAATGACTCTCCAGAAGGGCAACATCTCCGAGGATGAGGACTTTGTGGAGGAGATCGCTGGCACCAGGCACGAGAAAAGCAAGCTCCTCAGCCTCTTAGAGCACTTTGAGATCTGCCTGCCTGCCACACCCACGAAAGCCCTCAATCCACAGGCCAGAGAGTTTGTTCCACATCAGCAGTGGCGCAAGTCTGGAACCGAAGCCCCGACAAAAGCCTGTCTCTTTCCCAGCCTGTTAAAACACAACTCGACAGTCTCCAGAATGTGGGGCGAAGACAAACTGACCGATGTCAGAGTGCGCATCTACTTCCTTCCAGAAATTCCTCATGGTTTCTTCCATAGGCTCATCATCAAGGCATGCTCCCTGTATGCACCTTACTGGGTAGGACAAGAGCAGTGCCTGGTCATGTGCAACGCAAAGCCCCTGCTGTTTAAACAAAACTGCGAAGAAGATCAGTTCATTGAGATTCGCTACAGGAGACCTGAAGATAACAAATTCCAGCAGATGTGGGACATGATTCAGGCCATTATCCAGAAGATAAAGACTCTGATGGAGCAGTGGCCTGGCCTGTGTCAACACATATGCAGCCCTTGCACAGTGCCAAACTGTTCTGCAGACTACGAATGGACAGATCTGAGCGGATCAGATGACATCTATGACATGTACGTACCCAGTGCATCAGACTCTGAAGCGAAGAATGCACAAAATAACACCTTCTATATGACTGGGAATATCTCCATGGGCTCGGGAACTCAGAGTGTCAATAATCAGGTAattcatttgtgtttcagtACTATAAAGCAACACATCCCTTTATCATTCTTtctctaattaaaatgtgatcatATTCagtaaaatcaaactaaatctataaatattgtaaatccTTAAAGATGAGCAACgcttgagattttttttttttagaattcaTATCAGAATGCGTATTTGTAATCCAcaatttttatttcagtctgtATTTTTGTCAGTATATCAGTAAAGAATTGCACtcagacatttgcatttttcaaaaggTGTGTTGATTGTAAACTTCGAGAAAACGGACTGGTTTGAATCACCTcccttcctttttaaaatagattGTATAATACTGTTTAAATGAAGAACACAGCTATTGAAAATGTTCACTTCTGTAAAGCAAGGAAATGtagtaaataacatttttccTGCTAGAACTTTATAATACACTCTTGACTGTCATTATATTCAGCACTGGGTTGGGCTCTCCTAAACACTTAGAGCAGCAGGTTTTGAAAACACTCAGGGGCTAATGGAAGATTTAAAAGCACTGAGGTATTAAGTAACCTATCTGCCAGTTCTGACAGATGACTCTAATATAAATCCTAGGTGTTATATAAAACCAATATACAGTTATCAGCGTGTTGCTGCTTCCTATCAGACTGCCAATATTGCGGTCAAATCACCTGACTTACTTTATGGATATATGCCTGTTGTTTGCGTaatgatttacatttaacatatgttttatttgttttgcttttccttcaGAGTTTTCAAGATCATCAAAGTAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 44588 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 151441 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 695987 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 986498 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1110888 14063495 ~ 14065298 (-) True G22943
TU29111 lncRNA upstream 549645 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 883103 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 1052481 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 1106561 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 1193538 16378518 ~ 16380291 (-) True G23344
AMCG00007344 mRNA downstream 22478 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007340 mRNA downstream 238659 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007333 mRNA downstream 750682 14407144 ~ 14425504 (-) True AMCG00007333
AMCG00007331 mRNA downstream 849686 14286615 ~ 14326500 (-) True AMCG00007331
AMCG00007330 mRNA downstream 901752 14274060 ~ 14274434 (-) True AMCG00007330
AMCG00007346 mRNA upstream 4308 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007348 mRNA upstream 36117 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007349 mRNA upstream 103360 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007353 mRNA upstream 192638 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007359 mRNA upstream 565128 15750108 ~ 15756250 (-) True AMCG00007359
TU28749 other downstream 1230121 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1824113 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 4985982 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6779962 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7669311 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1136017 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1136057 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1345194 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2870490 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3591380 18776360 ~ 18777638 (-) True G23838

Expression Profile