RNA id: AMCG00007349


Basic Information

Item Value
RNA id AMCG00007349
length 3501
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00007349
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15288340 ~ 15313433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCATGAAGCATTGCGTGCCCCAGTCTCCAGGAAGTCAAATCCCGTTGCTAACCAAACGAGTATAGCCACACATCTCATACTGATATGACAATAAAATGCGTTAGCTTGACTTTGAATTTGTAAGGTACTGCAGTAGTGTGATGCAGGATTGTCTGTCCACTATGCGGCCTGTCACAGCACGGATGAGGGTGACAGAGTTCACGGGATCAGACCAGCTGAACCCCAGCCCTCTGGTTTACGAAGACACCGACCTGCTAGTGGAGCAGTATCTGACTCCAGACAAACTGCAAGCCTTGACAGGGACAGAAGATCTACAACAAGTAAAAGTCCTGGACATGTGTGTGGACACCCGAGAAAACACTCTGGGCAACTTTGGTATCTATTTGCCCAGCCTTATCCAACTGAAGATGAACAACAGTCTGATAGTGTCTGTGAGGGACCTCGGAACAACCCTCTCCCACCTGCAGGTCTTATGGATGGCCCGCTGTGGCCTGGCTGACTTGGATGGGATACCCTCGTTCTCTTCTCTGAAGGAACTGTACCTGGCCTACAATGACATTTCGGATCTGAGTCAGGTGAGCTTACTGGACAACCTGGAGATTCTGGATCTGGAGGGGAACAACATCGATGACATCACCCAGGTTCAGTATCTGGGACTGTGCTGCCAGCTGAACACATTAACCTTGGAAGGCAATCCAATCTGCTCACGACCACATCCAGATTCCCCTGAGTCCCAGCAATACAGCTACCGGGTCGCTGTCAGAGAGCTGGTTCCACAGCTGCAGTATCTGGATGATGTCCCTGCTGATCGCATGGACCTTCTATCCAGGTGCACCACCAGCCAGGACTGGGTTATAGTCAAAGAGTCCATCAAGGACAGCATCTGGCCAGACGGTCTGGATGTACAGGAAGAAGCTGAAGCCACCATCTCTGGCAGGCCCTCCACCGGTCTGCGACCAGGCACCGGTCGCCCCAGCTCGGCCTGCAGGGTTTTGGCGACTTCCAGGCCTCTCAGTGCCAGCCGCCCCAGCAGTGCCAGGCCCCTCTCCTCCCCCAGCTCTCGCCCAGGCTCCTCTGAATCCGACACGGCATCTCTCGAGCAGGATGCCAGCAGTCTAACCCATGGTGTCGGAAGGGTAATTTGTGGCAATCCTGTAAAAGCTCTTTGCGCGCGGAGGCAGAAACTGAACCTTTCTTCCAGACTTCACTCAGACCCACTGGCACCGCACAAGTATATTCCAGAGCACACCTATAGCATCGAAGACCTGGAAATCAAGAACAGAGAGGATTTGTTTGCCGAACTTAGGACGTGGAGAAAAGAACACATCaaACGTCTAGAAGCCATTCAAAAGGAGCGAGAGCCCCAGATTCTGAAGATCTCCCACAGTCCTGAGGAAGAGGGGGCCGGCAGTCTCAGTGACTGCAGTGAGGAAGGGGAGATCAGCGGAGCCTGTGGCAGTGACTGGTCCAGCAGGGCCTCGCCAGACTCCGCTTTCCAGTCCCCTGAGTGCCAATCCGCTTACCCAGAGAGAGTGGTCACATCCCCTGAAGTCCTGCGCCAGTCTGTATCGCCGGTGTCCCCAGTgtctccgtctccccctcccccccgctcAGCGCCCCCTGCAGTCCGTAGGGTCTCAGAGACCGGGGCGAGACGTCTGCGGATCCCCGTCTCACAGCAGGAGCAGAAGAGCCCCCAGTACAGAGACTCTGCTGTGGCCCTGTGCCCAGATGAGGAGGTTACTTTGCTGGAGCCACAGAGAGTAAGCCCAGAGCACAAGACAGAGTGGTACAAAGCTCAGCAGGGCCGGAGAGTGGGGCCTGGCAGCGGCGCTGACTCCCTCAGACCAGAGTCTGGACCAGCAGCTATAGGGGTCAGCAATCACAGtgctcaGGCGGAGAGATCGTCTGTAAAACACAGTGACCGCCACCAGCCCATTATCCGCTCCTCGGTGAAGACCCCAGAGGGAGCTTTGCCACTGTCCCCGGCCCGTCCTCTCACAGCCAGGGCAGTCCTGCAGAGACTGCCCAACAGAGCGCCACTGCTGCCCAGCCGGGGCAGCACCACCTCCAGCTGAGAGCAGGGGGTCGCCACTCTCTGAGACTGGCCTCAGTCCCCAGGGCTGGGGTACAATACAGAagtggtctccagccctggtcttgGGGAGCTGCAGTCCAGTACGTTTTCCAGATCACCCCTAAACCATCAGCTTCCAAAGACGGGCAACACTTGTTAGTTATTCATCAGTTAAGCAAAGGGGTTGCTCTATAAAGGACACCCTGGTCCCTGAGGGCTGAAGGCACAAATGCAGGTGATCTCTGAGTTATTGAGGTGACCAGTCTTcccattaacattttcatttttcggTCCATTCAGATATTTGAAGTTTGAAACTCATGAATTGACCCAGTGTGCGTTTCTTTAGATTAGACAGCTGAGCTCTGGTTGTTAACAGCACTCAAATGTACCTCAGTAcctcaaatatatttattaaagttgCCAAATTTCAGTGATCTGTAACATCTCAGTAAAGGTAACAAACCAAGACAATAGCCTGGATTTAGCTCATCTTGGACCCATTTGTCAGATGATTTACCCAGTACTTggacagctggtttcacagacccagattagctcTAGTCATGGACTATCTATCCGATGTTATTACAGTAGTTCTTGAATTGTGCTCGTTGAGCTCTGTGTAACCAACCAAAAGACTTCTAACCCATGGCGATCCTCCATCAAGTACTGGTTAGTCAATGTTTAATTGGCAAATAGGTCCAAATCAGatgattttatttctgcagcATAATGGTTCATCCCAAGactttttatttgtcttatttaagGGTGCGTCATCAGTTCAGAAGCAAACCCTGCCATGGAAAGCTTAAACACATCTGGAGTGTGCAGGGTGACAGGGATTGCAGTCACAGTACTGCTAAAACATTACTTGTCTGTTGGTTCCAATTTATTTAATCGATGATTTTTCGGATTACTTTTACTAatggtatttttatatttattgttgtgaCTCATGTTAGTGCACGCTATGTAATTGCTCTGTCATGACCCTGGTAATAAATTTGTAATTTGTCTCATAGAAGTGTGAGAGATTAACTAAAGGATAAGATGTTATTGTTTGTCTTTCATCATGTCTGGCACACTAGTGGTATAAACTGCATACACCTCTCACTTCTGTctcttggaaaataaatatagaacaaCATCTTCAACAAATGTGATGGATCACCTGTCTATAAATGTTATGActaaaatgatttgtattttctgaagaagagtattgatttatatatagatataaatattgtatacatattgttgttGGGATAGCTGTGTTAATCCTTTTGAAGGAATTTTAGCATCATTCTAACTgttaaagtttttaaattgatctGAATCGaatactttttgtttgtgaatgtttttgCCCTAACCTGGGTCCAGTGCAtgatttatttagaaaacaaaagtcc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 156742 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 263595 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 808141 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1098652 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1223042 14063495 ~ 14065298 (-) True G22943
TU29111 lncRNA upstream 421192 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 754650 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 924028 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 978108 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 1065085 16378518 ~ 16380291 (-) True G23344
AMCG00007348 mRNA downstream 10382 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007346 mRNA downstream 78322 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007347 mRNA downstream 103360 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007344 mRNA downstream 134632 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007340 mRNA downstream 350813 14935599 ~ 14937527 (-) True AMCG00007340
AMCG00007353 mRNA upstream 64185 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007359 mRNA upstream 436675 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007358 mRNA upstream 442860 15756293 ~ 15775512 (-) True AMCG00007358
AMCG00007361 mRNA upstream 561534 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007363 mRNA upstream 620714 15934147 ~ 15938530 (-) True AMCG00007363
TU28749 other downstream 1342275 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 1936267 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5098136 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6892116 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7781465 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 1007564 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 1007604 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1216741 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2742037 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3462927 18776360 ~ 18777638 (-) True G23838

Expression Profile