RNA id: TU28988



Basic Information


Item Value
RNA id TU28988
length 714
RNA type TUCP
GC content 0.46
exon number 3
gene id AMCG00007352
representative False

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15276711 ~ 15287960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGGAATACAATTCTCACTTCGGAGCCCCTTCCCCTCTCGACTCAGATCCTAGTATGGAGCGCAGCGTTGACGATGCCTATAGTGTGGAAGAGTTTGATCCCGTTGTCAATGCACTTCCATCTGGAGCACAGCTAGGCAATGGCAGTTCAAGACCAATTTCAGAGACCACTTGTTCTCATCCAAGGTCGGCACCACCCAGATCTGCTTTGAAAACGGCTCACAGTGTGTTCCAGCCCAGACTGAACAGAAAGTGTCCCCTAGTGGTGCTGACGGCTCAAAGGACTGCCCGTTCCAAATATGGCTTCAATTTCCTGAGCTACCCTCCAATCACTGCCGATATCCACGTTATCAGAAGATAGCCCTGCCCTGCTTTGTCTTTTCCTGATACTGGATAGGGAGGATGCCGTGGCTCATCACAGCTTATTAGCACATTATGAAAAAATCCACTGTGTGCTTCTTCTTATTTACACAACAAACATTAAATGTACAGAATGCAGGCAGTCTAAGGGACCTCGGTCTGTTTTACACCAAACTTAGCTACCATAATGGAAAACAAGGGCAGTTGAACCTCACCCAGAGATCTGAAAGGCCCGGCCTGGCTTTACAATTGTTTGATGCTTCTACAGCTGAGGCTGATATGATCAAGGGATTAGAATGAGATCAACTTCAATCATTCtagacatttatacacaaataaatgtctgtttatacaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28987 lncRNA upstream 6787 15276711 ~ 15279710 (+) False AMCG00007352
TU28943 lncRNA upstream 261809 15024226 ~ 15024688 (+) True G23100
TU28809 lncRNA upstream 995872 14286133 ~ 14290625 (+) True G22979
TU28789 lncRNA upstream 1071441 14176735 ~ 14215056 (+) False G22962
TU28788 lncRNA upstream 1071441 14210153 ~ 14215056 (+) True G22962
TU29003 lncRNA downstream 84046 15372006 ~ 15379965 (+) False AMCG00007350
TU29023 lncRNA downstream 381982 15669942 ~ 15753760 (+) True G23154
TU29063 lncRNA downstream 742804 16030764 ~ 16067082 (+) True G23189
TU29158 lncRNA downstream 864500 16152460 ~ 16157347 (+) True G23263
TU29191 lncRNA downstream 1005144 16293104 ~ 16296008 (+) True G23294
AMCG00007345 mRNA upstream 114020 15166463 ~ 15172477 (+) True AMCG00007345
AMCG00007342 mRNA upstream 269962 14977530 ~ 15016535 (+) True AMCG00007342
AMCG00007343 mRNA upstream 314260 14945229 ~ 14972237 (+) True AMCG00007343
AMCG00007341 mRNA upstream 393350 14661678 ~ 14893147 (+) True AMCG00007341
AMCG00007338 mRNA upstream 626436 14630762 ~ 14660061 (+) True AMCG00007338
AMCG00007351 mRNA downstream 44648 15332608 ~ 15349542 (+) True AMCG00007351
AMCG00007350 mRNA downstream 78701 15366661 ~ 15379061 (+) True AMCG00007350
AMCG00007354 mRNA downstream 204081 15492041 ~ 15579231 (+) True AMCG00007354
AMCG00007355 mRNA downstream 325835 15613795 ~ 15623775 (+) True AMCG00007355
AMCG00007356 mRNA downstream 353935 15641895 ~ 15667423 (+) True AMCG00007356
TU28829 other upstream 796805 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 4673393 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 5786769 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 6575186 8704657 ~ 8711311 (+) True AMCG00007253
TU27825 other upstream 6890255 8367436 ~ 8396242 (+) True AMCG00007243
TU29675 other downstream 2910808 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 2919118 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 3002148 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 3279809 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 3763382 19051342 ~ 19056133 (+) True G23893

Expression Profile