RNA id: AMCG00007353


Basic Information

Item Value
RNA id AMCG00007353
length 3085
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00007353
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15377618 ~ 15385002 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCTCGCAGACATGGCTAATGTGAAGGAACAGCTGATTGAGCACGTGGTCAAGGATGAGCAATCCATCCCTCAGAACAAGGTGACGGTGGTCGGTGTGGGCATGGTGGGCATGGCCTGTGCCATCAGCATCCTCATGAAGCTTGCCGATGAACTAGCCCTTGTGGATGTGATCGAGGACAAGCTGAAGGGTGAGATGATGGACCTGCAACATGGAGGGCTTTTCTTGCGCACTCCGAAAATCGTTGCTGATAAAGATTACAGCGTGACTGCCAACTCCAAGGTGGTCGTGGTCACTGCTGGGGCCAGGcagcaggagggagagagccGCCTCAACCTGGTTCAGCGCAACGTCAACATCTTCAAGTTCATCATCCCCAACATCGTCAAGTACAGCCCCAACTGCATCATCCTGGTGGTCTCCAACCCCGTGGATATCCTGACCTATGTGGCTTGGAAGCTCAGTGGCTTCCCCAGGCACCGTGTGATTGGCAGTGGCTGCAATCTGGACTCGGCTCGCTTCCGTTACCTGATGGGGGAGAGACTGAACCTGCACCCATCCAGCTGTCATGGCTGGGTGATTGGAGAGCATGGAGACTCCAGCGTGCCAGTGTGGAGTGGAATCAATGTGGCTGGAGTGTCTCTTCAGAAACTGAACCCTGACATGGGAACAGACCAAGACTCTGAGAACTGGAAGGATGTGCACAAGCAGGTTGTTGAGAGtgCTTATGAGGTTATTAAATTGAAGGGCTACACTTCCTGGGCTATTGGGATGTCTGTGACCGACCTGGTGGAGACCCTCCTGAAGAACCTGCGCAAAGTGCACCCTGTGTCCACCATGGTCAAGGGCATGCATGGAATCCATGATGAGGTGTTCCTGAGTGTCCCCTGTGTATTGGGCAACACTGGGCTCTCTGATATTGTGAAGATGAGCCTGAAGAAAGAGGAGGAAGATCAGCTGAGGAAGAGCGCCGACACACTGTGGGGTGTTCAGAAGGAGCTGAAGTTGTAACCACCTCTGGAGGAAAAGCTCCCTAGATTTCTACCCTCTCTCCCCACTACCCTGCAATAGCCGGCTTCTCCTGTCCCTTCACGTCTCGCAGCAAACCTCCAAATGGATGCACCATAGCAATTTAGTGTGgctggagggggagagggaagggggggggtcCTGTCTGTAATGACTGATCGATCTCATCAGTTAACTCCAAATCCAAGGCCtttgtaaaatgtgtgcatctgtgtttaGTCAGTCTTCCCTTGCACTCCTTGTAGaaattctatttaaaatatttatagaagAGAGAATCTTGCTTTCCATCTTGTTCTTGGGTGCAGGCTGGCTCTCATTTTGGCTCAGTTTGGTTTATTCTTCTCTATCCAACAGCCCCTCCCTCCCCATACAAAATTCATATAGCAGTATAGCACGTCTCTCTACAATCTCTGGGAGGAAAAACAATGGAACGTTTGAAGCATAAAATTAGGCCTTTGTTTGACAGGAAACCGAATGAATCGGTGTCCTTTTCCAGCCCACTTCCCATTGGAGGTTGAGAAGCAGTGATCTGACAGCCTGCAGCTTGGTTTAAATGGGGTGGATCTACTggtataagaaaaataaaccaataaatgaAAACTAGCTACCATTCTGGCATGAGCtgtacaatattttctttaattttttcaaTTAAAGGTAAGATGTTGCATAAATAGAGAAGCAAAGTATTTGAGCCATTGTGAAATTGGGAGCACTTGTGGTAGGATAGGAAGCAATATTGGTGACCTGGCTTGCTAGGGCCTTGTGCATATGTATCCACTTctaaatatataattattaattttttttttttttttttgggactTCATCCAGGACATGTCTGACGCATCACTCTGTGGTAGTGGAAGGCTCAGTATTGCAGCACAGTGTTTGGTATAGTGGAACATAGTGTAAATGTGTACAACCCCCCCAAACCATGAGGCAGCTGGATGTTCCACTTGTATACACTCCACCTAATAAACTTCCAGGATAAACCCTCCTCCTCCTGGCTCACTCCTGGTATTCTTTGTTTGCTGTGGCACACTTGCATATATCTACTcctaacaaattaatttaacacGGATATGGATCAATGCTATGATTTATCTCCTGATGAAGACCTGTAATGTATGGATTATATATGTAGTAATATAGAAGGGTGTGGGTactacttaattttatttttaactggcACCTCCTCAGTGTGGAtgtgaatgtttcattttaaaagtttccACTTCATTGGCACCCTCTTAAAGGACccaaggtatttttttttatcttaccTGTGAATGGGGCAAAGGTGGAGAGGATTGAAAAAGTTCATTAATCTTGAGAGTTGATGGTCTTCACTTGGAATACCTATAGCAGTAGATCTAGTTCATCGATCTGGGTCAGTTGTGCTTTGGAGGTTTGGGGGTAAAACCCACTATGCCCTGTGTCTCTAATGAAGTCTGAATGGTTCCACTGAACATCAAATCTGATTTCAGTCTCTGATTGggaatgtgaaataattaattagatttGGGAAGAAGGCATGAAGCATCTCTTGGAGGGAACCCtctggaaaataagaaaaaggggCAACTGTCCTGTCCGGTCTCATGCAGCCTCTTTTTGAAGGATTCAAACCAATCATCTTCCACATGGCCAGGCGACCTCTTCCCACTCTCCTAACCCTTTGCATGAAAGAGGCTGTGAGACTAAGTTCTGGTTTAGAGTGGAAGGTGAGCAGGGTAATTCCCTCAACTCCCTGAAATGAGGAAATCTTTCCCATCAGGGCTTCCGAATAGTGAaatgcagattaattaaaatacatacaaaaaaatacatgtaaaccCCTAATGAAAATGCTGATAATGCCATGGGTAGCACTACTAATAACTCCTGCTGGCCCCCTTTTACAAAATATCTAATTTAACCTGAAACAATAGTTTTAGGAcgggtctccaaccctggtcctggagagccccaatccagttAAATGTTATAGGTCACCATAAATCACCAGTTTCTAAATATTGTGAACACATGtgatttattaatcaattaa

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0044262 cellular carbohydrate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004459 L-lactate dehydrogenase activity molecular_function

KEGG:

id description
K00016 LDH, ldh; L-lactate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 246020 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 352873 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 897419 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1187930 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1312320 14063495 ~ 14065298 (-) True G22943
TU29111 lncRNA upstream 349623 15734625 ~ 15800952 (-) True G23225
TU29141 lncRNA upstream 683081 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 852459 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 906539 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 993516 16378518 ~ 16380291 (-) True G23344
AMCG00007349 mRNA downstream 64185 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007348 mRNA downstream 99660 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007346 mRNA downstream 167600 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007347 mRNA downstream 192638 15176186 ~ 15184980 (-) True AMCG00007347
AMCG00007344 mRNA downstream 223910 15152428 ~ 15153708 (-) True AMCG00007344
AMCG00007359 mRNA upstream 365106 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007358 mRNA upstream 371291 15756293 ~ 15775512 (-) True AMCG00007358
AMCG00007361 mRNA upstream 489965 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007363 mRNA upstream 549145 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007362 mRNA upstream 594311 15979313 ~ 15988623 (-) True AMCG00007362
TU28749 other downstream 1431553 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2025545 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5187414 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 6981394 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 7870743 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 935995 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 936035 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 1145172 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2670468 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3391358 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000330_01043094_01051071.mRNA True 999 mRNA 0.53 7 CI01000330 1043094 ~ 1051071 (+)