RNA id: AMCG00007354



Basic Information


Item Value
RNA id AMCG00007354
length 588
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00007354
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15492041 ~ 15579231 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTGGCAGCTGCGCCAGAAAGCAGAAACATGTGCGGACTGCTCCCCCACCTCCGTCCCACATGGTGTGCGGTTTAAGCTTGAAGCTGTGAGTCACGCTTTGGTCACCCGTAAGGACCTGATGCTTGGCGAAAACAACCTGCCCAACTGCTGCCTGTGCCGCCATCATTCAGGGGAGCTGATTTATCACAGGATGGTTTCCCACTGTGTGGAGCAATCATCAAGGGCCGATTGCTCCAGCCTTCGAgtaaGATGCATTGAGGGCCAGAGAGCTAAAGCTTCAAAGTACCCAAGCAGTTGTGTTCAGAGCTGCTGTCTGGCACTGCTGCTGACAGTGCTGCCCTTCACTGGAGCTCGAAATTATGATCCCGGACAGACTGTGGTCGGACTGGTGAAGCTTGGAGTCCACTGTGTCACGTGTCAGAAAGTCGCAATAAAGATAGTCAACCGGGAGAAGCTGAGTGAGTCCGTACTAATGAAGCCACGGCGATATATCAAACGAGTCAGCCGTCCCCCAAACCACTGCGGTGATACTAATTTTTCCATCACAACACACAGGCCCCAACTGCTTCGACAGAGGGTGCCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29003 lncRNA upstream 112076 15372006 ~ 15379965 (+) False AMCG00007350
TU28981 lncRNA upstream 182290 15217176 ~ 15309751 (+) True G23130
TU28987 lncRNA upstream 212331 15276711 ~ 15279710 (+) False AMCG00007352
TU28943 lncRNA upstream 467353 15024226 ~ 15024688 (+) True G23100
TU28809 lncRNA upstream 1201416 14286133 ~ 14290625 (+) True G22979
TU29023 lncRNA downstream 90711 15669942 ~ 15753760 (+) True G23154
TU29063 lncRNA downstream 451533 16030764 ~ 16067082 (+) True G23189
TU29158 lncRNA downstream 573229 16152460 ~ 16157347 (+) True G23263
TU29191 lncRNA downstream 713873 16293104 ~ 16296008 (+) True G23294
TU29225 lncRNA downstream 777459 16356690 ~ 16411211 (+) False G23322
AMCG00007350 mRNA upstream 112980 15366661 ~ 15379061 (+) True AMCG00007350
AMCG00007351 mRNA upstream 142499 15332608 ~ 15349542 (+) True AMCG00007351
AMCG00007352 mRNA upstream 205411 15278727 ~ 15286630 (+) True AMCG00007352
AMCG00007345 mRNA upstream 319564 15166463 ~ 15172477 (+) True AMCG00007345
AMCG00007342 mRNA upstream 475506 14977530 ~ 15016535 (+) True AMCG00007342
AMCG00007355 mRNA downstream 34564 15613795 ~ 15623775 (+) True AMCG00007355
AMCG00007356 mRNA downstream 62664 15641895 ~ 15667423 (+) True AMCG00007356
AMCG00007357 mRNA downstream 100091 15679322 ~ 15691676 (+) True AMCG00007357
AMCG00007360 mRNA downstream 315533 15894764 ~ 15915649 (+) True AMCG00007360
AMCG00007370 mRNA downstream 501892 16081123 ~ 16100369 (+) True AMCG00007370
TU28988 other upstream 204081 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 1002349 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 4878937 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 5992313 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 6780730 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 2619537 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 2627847 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 2710877 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 2988538 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 3472111 19051342 ~ 19056133 (+) True G23893

Expression Profile