RNA id: AMCG00007358


Basic Information

Item Value
RNA id AMCG00007358
length 4848
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00007358
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15756293 ~ 15775512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCCTTCAAGCTGTGGGGAAAGTGTTGAGGAAGTCTAAGACGAAGCCCAATGGTAAGAAGCCGCCCACAGAGGAGAAGAAACAGTACCTTGAGTCTGAGTACACCAAAGTCCGGGTCGTCGACTTCGACCTCAAAGAGCTGGTCGTGTTACCCAGAGAAATCGATCTCAACGAATGGCTAGCCAGCAACACAACAACCTTCTTCAATCTCATAAACCTGCAGTATAGCACAATCTCAGAGTTTTGTACTGGGGAGACCTGTCAAGCCATGACAGCCTGCAATACGTAAGTACACCCACCTCATTTTTACACTCGGCCCCAGAGTCaagtttctttttcttaaaaagcATTAATCAGGAAGCCAACTTGCAGCACTGATGGACGTTAGTGTGGGTCATCTATCAGTCGCTGGTGCCGGGAATGCAAACTGCTTGGCTATGTTTTTGGGTTCAAgttaaacttgtttttgttttatatttttacgcCCTAGAGGTATTGCTTAGTACATATTTTCCAGCCTTTTTTCAGTTGCATTATGCAATATAGAGGTATTAAAGAACCTTTCAAGTTTTTCAGGGCAGCCAACTCAGGTAATCAAATTACTTTCGGATGTGCTGCTTGAGGCTCAGATCTGAAATagtttttgtgtcattttgggAAAGAATGAAAGCAGTCTGGCTCTTTTAGGCACTTAAgctattataatattataaatgcatcactgacatgaaaacaaatgaggacatttttttaatttattttttaatgtgtggtACTTATCACCATCTTTTATCTATATATTATGCGGAAGATCTTTTTACCTGTCTTATGAATCACAGTATAGTGCAATGATTCATTACTGTACCCCTCGCTATCCCTCCTGCCTTTGATCTACAGAAAGGACCAATGCTGTTTAAAGTAGAGTCCTGACTGCCTCTACCCAGGTAGTTATAAAATATCGTATGTACACATGCGGctgatgcttttatccaaagGGACTCGTGGTCAACAATGCAGTGGTAGTATAAATTGATAGGGAATTGTAAAAAGACAAAGTGTAGAGTGATCAACCAATGTAGCATGTGGCATAATGTCCTCTGTATATCATGAAGCAGCGCAAGATGGAGGAACTGCAGGCAATGGATTCCAGTACAGGAAACCTCATTAGAAAACGTGGAGGTGATAGAACCAAGAGTTAAACACAACGgcgctttgttttttttgtttttttttgggtaaaacaaatgtctgatTCCAGCTCCCTTTAGTTTAAGAACACTGAGGAAGGCAAGTTGCAACAGCTGTTATTAACCTGCTTCCTGACAAGCTTTCTACGGATTTGaggtttggttgtttttgaaGGTTGCGGATAAGCCTGGGGGGAACGAAGATTCCACACCAAGTAAAGCCATCAAACGTCTCCAGAGCTTGTTCTTGCAATTAAAGTTGCAGAGTGGAAACCACAGCAATGTCTTTTGTGAAGGAGCCAGGTACACACACTCCTCTGTTGTGCTGCCGACTCTTGAGTAGATGAAGCCTCTTgcagcctgcctgcctgctgggTCCAGGAAGGGTGTTTCGGGGAAAGCAAAAGGGTACTTCATCACAAGCTGCCATCAAAGGAACAAGACGCGCCTTTATAATCAAGCTGTCCCTTCCCTGTTTCTATAGACAAGGCCTCCAGGCAGAGCTCACTTGTGTCCCCCTGCCCCCGACTCCTTTCTCTGTGCTGTTTCCCTCCAGTGGGATTCAAAGGGAGATCTGGAAGCAAGACGTACAAAGTCAATAATGAATTCCAGAACTCCAATAATGGATGCTTCCAAATTACACGCAGAGTCTATATTGGATAATTATTTGGATTAATGTGTGATCGTTGTTGACTGATCTTACCCCCATGGCCATTGGAGGTGTACGCTTCTTCAGGAGGTGTTTTCATGATGAACAATTTTGCACTGGCTGTTATGCTCTAACCATTTCTGCAGCTGGTCTGTAACCTGCTGATCAGAACAGGTCTGGTTGGATTAAGCTTCCAAAGTGGAACTCCACCTCAGGTTAAatcctgttttatttgaaagcattctgGCTGCTAGCCTGTGTGCGCTGGGTAGGATTCTTGTTTATTAGTAACCATACAAGAAGATAACTAGCGCAGGGACGATACACCTTTCCATGTTCCACAGATAACGCCACCAAAGATGTAAATTTGTACTTGAGCTCGGGACACACTAGGCCGTCGTAAGCCTCCCAGAGGCCACTGGATTTACAAGAAAGGGAAGAGGCAAACCAATACATGTCTTAGATTTTGTTGGAGGTCTAAAGGAGAAGATTCTCCATACTTGACAGGGGGATCTATATGATTAGAGTGATGTGTCAGGttgtgaagaagagaaaagtgTTCTCAGGGCAGGTACATCTGTCAGTGCTGGCAAGAGGTGAGTCAGCCTGCAGTCTGCTATTATAAAAGGGATGACTGGGTTAATGTAGCATAAGCATTCCTGTACAGGGAGTTTGAATCGGTTTTGTAACTCCCTGTGGTTTCATCTCAGAGAGGAGCCCCGTGCACAAATTAGGTCAACGTTGTACCTTCGCAGCTGTTTTACATAAATTCCTCCAACAACGGCTGGgagaaaatatttactttaactATTTACTGAGCAGGTTTGCCCTGTCAGAGTGGATAAACAGCCTGGCGTCTGAGAGCTGTTGTCTGTACACAGGTCCTCAGATTTCAGTCGTGGGTGTCCTGAAAAACTGGACAATCCACAGATTTTCACCATATCTTACTGTACATCGtccaaacataaaataaacggtttcaagaaaaaataaggaaaagcaCAACTCACAtccaattaattttctttacagGAAACAGGATTTAAGAATAATGTGTTTAAAGCCTAAAGATACAAGTTAGTTTCTAGAGAACACAAGTTGGTCAGAGAGGGGAAAATTGaaatctttaaatacattaactgtAAGAAGTTCTCTTTTCTAGATTATCTTTAACTTCCTGATTTGGAGTGTTTAATGGTCTCCAGTTACTGGGGGAAGTCATGTGCAAACCCAGATATTTTTCAGATGATCTCATTTAAAGGTAACACTTCACAATTATGGGCATCAGTAAATGTCTGAATCCCActggaataacacatgaatgcCTCCTGCACCTCCACTGAGTTCTGCTGTTCTGCTGAGTTTATCGCATGTATGAGCGTTAGTGTGTTAACCCTTTCCCTAACCCAGACCCTCACCTTAACAGCAGAACCTGGATGATGTGCACGGGTGTTGTTCCTTTGGGAGTCATACATCCATTCactaagaattggtgcccattattgtaaagtgtgacccttCTAAGAGTTATAATCAAAATTAACTATAAATAGGAGgaaaaatatcagaatatcacaccttttttattatatttactcaTTGAACTAGCGTCCCTGCTGTGATTTATGATGTTGGCGTTCAGAGCACCTCCACATATTCTCACTGCAATGCTGCCATGAGCTGTTCCTGTGACGCGGTGACCCGGTAGTCCGGGCCATCTTATCCAGAGCAGCGTCATTTCCCAAAAAGAGTTTCTAGTGGGCCTTTGAAACCCGACTTGTCTGAGAATGTGACCCCTTGTCTGGGAATGCAGCAGCCACTGTACACAACCCTGGTGAGAATGTCCTTTTTCTTTCATGGCTGGGATTATGTGAAGCTTGCCAGAGATGTCTATCTCTCTGGGCATGTTGCGATACAGTCCCCAATTACAAACAGAGAActtcttgtttctttgttgttttttctttttaccttcAAACCTATTTTGTTAACGGATATTCAAAACAACTGCCCCTATCTGGTCTCTATATTTGCCTGTGCTAGTTGGGCTTACTACAAAGAATAGAAAGGAACACGGACCGCCTACGTGGTTTCTCAGCCCTGCTGCAGACAGGTGTCTCCTCTCCAGCCCACTCATGCTCCCTGACAGGATGACACTAGGCTGTGTGAAAGGCCCTGATTGGTGTTTTGTTGTCAGTAGAACTGCGCATGCAATGAAGGAGCCCCTACTGTACAGGAGAACACGCAGGGATTGGGGGGGGGTTGCTTCCGCTCAGCTGTAGCACCTGGCTGATGAGCTCGCAGTtgggtttcttgttttgttttttgtcctgcGGGATCAATGAAGGACCATCATGCCTTGTGTGTCCCATTGTCCCATAGTTATGCGTTGGTAGCTTCCCAAAAATTGGACAAGAATGTGTTACGtgatgcataaaataaaaataaataaaaaatgcacaccTATTGATTTAGTATTGTGTCATGAGGACATGAGAAGGGCCCTGACAATGATACCATATTGATCCAAGGGCCTTCTCGACCTGCTTCCTTCCTCAGTGGCTACCTTACCATTGACTTCCACAATGGCCACAGTGTTAGTCTTTTGAAGCTGCTGTGTTAGTGCTTTTGTCGCAGGCTGTTCACAGATGGCACCCAGAGACGAGGGAGTGAACCTGCCTGATGTTTGGAAAAGCAGTTTCTCCTCACTGAGAACCACCAGATTTAACGCATCCATATCATTCTCAAACTTGACATGATTTGGTAGTTGTCTTGTGTGCCCCTGGAGCAAAGAGTGTCAAAGAAAAATTAGAAAATGACTAACCattgtttcatgcatttaattgaaCATGAAACAGcctattttaaagcttttcagTAGCATAAAATGCACATGTTTTCGTGGCTGGGACTTTCCCCAATGTGGAAATAATAACCCTCCATTTAACGTATAATTTAAACCATACATGGGAAAGTAGGCGgtgtacatctttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28948 lncRNA downstream 624695 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 731548 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 1276094 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1566605 14184702 ~ 14189688 (-) True G22971
TU28764 lncRNA downstream 1690995 14063495 ~ 14065298 (-) True G22943
TU29141 lncRNA upstream 292571 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 461949 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 516029 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 603006 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 885369 16660881 ~ 16662665 (-) True G23379
AMCG00007359 mRNA downstream 43 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007353 mRNA downstream 371291 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007349 mRNA downstream 442860 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007348 mRNA downstream 478335 15221097 ~ 15277958 (-) True AMCG00007348
AMCG00007346 mRNA downstream 546275 15189288 ~ 15210018 (-) True AMCG00007346
AMCG00007361 mRNA upstream 99455 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007363 mRNA upstream 158635 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007362 mRNA upstream 203801 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007364 mRNA upstream 494455 16269967 ~ 16270377 (-) True AMCG00007364
AMCG00007366 mRNA upstream 521490 16297002 ~ 16314032 (-) False AMCG00007366
TU28749 other downstream 1810228 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2404220 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5566089 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7360069 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8249418 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 545485 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 545525 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 754662 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2279958 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 3000848 18776360 ~ 18777638 (-) True G23838

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048709 True 1339 mRNA 0.44 5 NC_007136.7 22863028 ~ 22889519 (-)
grasscarp (Ctenopharyngodon idella) TU385155 True 2476 lncRNA 0.38 3 CI01000120 142646 ~ 154374 (-)
striped catfish (Pangasianodon hypophthalmus) TU385155 True 471 lncRNA 0.37 1 NC_047616.1 1897711 ~ 1898181 (-)