RNA id: AMCG00007363


Basic Information

Item Value
RNA id AMCG00007363
length 246
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00007363
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15934147 ~ 15938530 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGGGGAGAAAGCCCGTCGCCATGTGATGGACACCCAACGCTTGGCCAGCCTCCTGCAGCGGGGTGTGGAGCGCACTCTGGTCATCGACAGCCGCACCTTCTCCGAGTACAACACCTCGCATGTGCTCAGCTCTGTCAACGTCTGCTGTTCAAAGCTGGTGAAGAGGAGGCTGCAGCAGGACAAGGTCTCGGTTACCGAGCTCCTGCAGCCCAACGCCAAGATCAAGGCCCGCCCCCTGTAA

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29111 lncRNA downstream 133195 15734625 ~ 15800952 (-) True G23225
TU28948 lncRNA downstream 802549 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 909402 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 1453948 14478596 ~ 14480199 (-) True G23011
TU28799 lncRNA downstream 1744459 14184702 ~ 14189688 (-) True G22971
TU29141 lncRNA upstream 129553 16068083 ~ 16069464 (-) True G23250
TU29199 lncRNA upstream 298931 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA upstream 353011 16291541 ~ 16299256 (-) True AMCG00007366
TU29252 lncRNA upstream 439988 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 722351 16660881 ~ 16662665 (-) True G23379
AMCG00007361 mRNA downstream 43782 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007358 mRNA downstream 158635 15756293 ~ 15775512 (-) True AMCG00007358
AMCG00007359 mRNA downstream 177897 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007353 mRNA downstream 549145 15377618 ~ 15385002 (-) True AMCG00007353
AMCG00007349 mRNA downstream 620714 15288340 ~ 15313433 (-) True AMCG00007349
AMCG00007362 mRNA upstream 40783 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007364 mRNA upstream 331437 16269967 ~ 16270377 (-) True AMCG00007364
AMCG00007366 mRNA upstream 358472 16297002 ~ 16314032 (-) False AMCG00007366
AMCG00007365 mRNA upstream 383048 16321578 ~ 16345580 (-) True AMCG00007365
AMCG00007374 mRNA upstream 446855 16385385 ~ 16444113 (-) True AMCG00007374
TU28749 other downstream 1988082 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2582074 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 5743943 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7537923 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8427272 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 382467 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 382507 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 591644 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 2116940 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2837830 18776360 ~ 18777638 (-) True G23838

Expression Profile