RNA id: TU29239


Basic Information

Item Value
RNA id TU29239
length 898
RNA type TUCP
GC content 0.42
exon number 2
gene id AMCG00007365
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16320997 ~ 16345580 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTAATGCTAGCTAAGAAACTGTGCTTCATTATAATCACCTAGAAGTTGTTTTGGAATGGTCTGTGATCAgtgatttgtgtattttgcttCTCCCAGATGGCTAAACTGGCAAAAATGAAGATCCCGCCCAACGAGATGTTCAAATCAGAAACTGACAAATATTCTGCTTTTGACCAAATGGGTTTTCCCACTCATGATGCAGAGGGTAAGGAGATCAGCAAGGGCCAGACCAAGAAGTTGAAGAAGCTGTACGAAGCCCAGGAGAAACTGTACAAAGAGTACCTGGAGACAGCTCAGAACGGGGCCAGCGGCTGAGGAAGTGGATGAAAATCGCTCAGATAGGCGGCATGGGGAGAGCCACATCGACTAATCTTCTTCTCCAATCTGAGCTCAACACAGTCCAGCCTCTTCAGGGCCTAGATGGGGGATATACTGTCCCCAATGAGCTAAATATGGCCTGTTCTTGAAGACTTCAACAGGGTCTGACGTACAAAGTATTCCTTTCATTTCTTCTTCTATGTCGTTGTCTTTTTTGGTGCAAAATTCATGATCAAAGAACAGTGAAGTAAACGCCTGAAAGGTCTTTTTCATTGTCAAACTTTTTCAGGATTCAGAACTCTTGGTGTTACACTTCACCCGGTTTATAGAATCTGTATTGTAACTACGTGAGAAGGAGGACCTGGCCTGCTGAATATTCACAACCTCAACAGGCCGGTCCATTCAGTGAGCTTTAAACGGTTAATGGTATCCACAGCAAATTAAGGACAGGTGATTTTGTTGGTAACAGTCAAACAgggaattaaataaaagtttttgtCCTATGGTTGTTTTGTATGTTCAGTTAATTCAAGGATGAATAAaggaattatgcattttttaatttactaaagaTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29199 lncRNA downstream 21741 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA downstream 21741 16291541 ~ 16299256 (-) True AMCG00007366
TU29141 lncRNA downstream 251533 16068083 ~ 16069464 (-) True G23250
TU29111 lncRNA downstream 520045 15734625 ~ 15800952 (-) True G23225
TU28948 lncRNA downstream 1189399 15131388 ~ 15131598 (-) True G23105
TU29252 lncRNA upstream 55867 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 338230 16660881 ~ 16662665 (-) True G23379
TU29321 lncRNA upstream 383638 16706289 ~ 16709180 (-) True G23397
TU29362 lncRNA upstream 625801 16948452 ~ 16948745 (-) True G23429
TU29364 lncRNA upstream 641316 16963967 ~ 16964267 (-) True G23431
AMCG00007366 mRNA downstream 6965 16297002 ~ 16314032 (-) False AMCG00007366
AMCG00007364 mRNA downstream 50620 16269967 ~ 16270377 (-) True AMCG00007364
AMCG00007362 mRNA downstream 332374 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007363 mRNA downstream 382467 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007361 mRNA downstream 430632 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007374 mRNA upstream 62734 16385385 ~ 16444113 (-) True AMCG00007374
AMCG00007373 mRNA upstream 132882 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007375 mRNA upstream 146816 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007376 mRNA upstream 342900 16665551 ~ 16670635 (-) True AMCG00007376
AMCG00007380 mRNA upstream 389441 16712092 ~ 16732845 (-) True AMCG00007380
TU28749 other downstream 2374932 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2968924 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 6130793 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7924773 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8814122 7499447 ~ 7506875 (-) True G21942
TU29265 other upstream 207523 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 1732819 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2453709 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 3592495 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 4008862 20331513 ~ 20331811 (-) True G24217

Expression Profile