RNA id: TU29199


Basic Information

Item Value
RNA id TU29199
length 3409
lncRNA type read_through
GC content 0.38
exon number 8
gene id AMCG00007366
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16237461 ~ 16314032 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCTTATTGGCTGAGATCTGATTAGGTGTCTGAAAGGGGTAGAAAAGGATTTTGCTTTAACCACATGTTTAAGCTGCCTGTTTGTCATAAGCAGCTATGAATATAACAATGAAATACCAAAGGAGAAATATGAGCTCTTACTGTGAGTGACCTCAATTAAGTTGTGGAGTAATTTGTGCACACCTTTTGGCAATTTTGAGAGTCGGAGCAAGTCAGGTGTACAGTCTCAGCTGCCTGCCAGCATTCCTGACATTAAAGAAACCGCCACATCCAGTGAAGGGTGGTATTTATTCCACCAGTCATGTGGACATTGAACAGTTGCTATTCCGGAAGCTTGAAACTGCACCTGTTATTTCTTTTAAACTTGAAACTAGCCTCTGCGaaattttttaatgtagttatttttttgtttatgggATTCTTACTGGTCAATTATCATGCTACAGTTGACCTTAAACTACAAACTGCACCTGTGTGACTTCTTTTAGATTTATTATAGGCATCTAAAAGGAATGCGGTTTGGCCAGCTGATAAGTGTGGGAAATTGTGGTGCATTTCAGAAATTACATTCATAAACTCGTCTCAGTTTGCCAAGCGGATGTAAAGAACTCTCGGTTTCATTTTGCGAAGtgCTTGGAGATGGGGAGTCTTTGgATGAGGACTCGGAATTCAGTCTAGCCACGGATTTTGAAATTGGCCATTTTTTCCGTGAGCGAATAGTCCCTCGAGCCGTATTGTACTTCACTGGAGAAGCTTTAGAAGACGATGACAGTtttgaagaggaggaggcagaggaaggagaagaggagCACGAAGACGATGgagacgatgatgatgatgatgcaaaCTTTGCTCCTAAGGCATAATTCATTCTCACTTCATGCATTGATAGAAAGACGCCACCCAACCTGCTGAATGCAAGCAGCAGTAATGTTGAGATACCGCTGCCATATGACTAGAGGCGCCATGGCGACCGATGCTGTCCAAATAGTCTGCAGATGGCGTTTCCTCCTCCCTGCAGAACAATCTCCacgatctttaaaaaaaaaaaaaaaaaaaaaaaaaaaactccaaaaaaaagttttaaagtgcatgacttttcattttcttgatttattttcgCTTTACATTGTACAGAGTAAACCTGTTACTTCCTGGGATTTCTGAAAGTACAGCAGTAATAAGGTGCAGTCGATATTCTGTGTTCATCTTCTGTGAATGCTCAGAAAAGCTAAGCCCACAGGCTTCTAGGAGAAAACGTTGAACTCAACATCAACACATTCCTGACACCCTGTAAAGAAATAATTTTGACAACTTAAACGCTTCAGACTTATCCACCATTCGACTTCACATCATAGGTTACTCAGGGTTTTTTTATGccaagaaaaaattaaatgtgtgaaagTTCAACTATTGACAGGAACTTAACGTCATTGGGATAGCCTGCTTACGTTTGTCCATCGTTTGTTAAAATCGTTCTCTTTTTAAATCTAAGGTTTCACTTATACAGtagagtttttttattattatcccTCCCCCTTAGCCCCTAGTTTGGTTGCGTTTGGTTGGGACTTTCTGTATTGATTCGaatataaattgttttgcaCAGCTTGAGAACGCACTGGGGAAACCAGATCCTGTTATTTTCGTCTGTCGTTTCATCTGTTGCCGCACACCCCCTCAACCCACTTACAACCCCCCCCATGTCTGAAATCCTGCATCTTCAGTCCTCATGAGAAACTGTTGCTTTGCCTCAGCACTTAAGTGAACACTTACAAGATATTGccaaattatttgtattcttttaaatTTAAGTTGAAAGGACTCtgcaatgttatattttaatataaaataaatagaaacaacCAGGAGGGTGATCAATCAACAGTGTGCAATGCACATAATGAATGCATCAAACCTCTTGCCAACTGCATCAGTTTTGTTTAGGCTTTGGGCTGTTGGTGAATGCATGCACTGCTTACTTGCCAACGAAGCGCTATAATATTAGAGAGCATACTGCATTTTGGGGTTTCAAGCTCTTGAAACCCAGgtcattttctttaaatcacaTCTTTATTAGTAAAATCCATTTGCTTCACTTCTGTTTAAACTTCCAAGGTGGGTCTATGAGCATGTCTTTAATCCATAGCTCAGTGGCAGGACACTTTGCTTGTATGGTAACAGTAATAAATATGTTGATGTTTAACttaataaatatgtgtataaatgtgtgtgtgtgatctatatcacactcacagacactaTAAGAATGTCATATACACTGACATGCTGTCTTTTTTGCAGGCAATGCATAGATttgtcaaaatatttttaattaaagggaaaaaatgttaatgttattaaagTTCTCTGAAGTAATGCCATTTAATTTGACCTTACTGACAAGACAGCTGTGCTTTACCTTAAtgatctatttatttcttatccaTGAGCACCTTATGGATACCTGCACCCTTTGAGGTCTCCAGATTTTATGCAGCCAGGTTGGCAAGTATCTGTTGTGGATCATTATGTTTTCATAGAATCTCAGATCAACAAGAGAAGTGTGCCTCACGGTACCTCGTACAGGGGCCAGACTCCAGACACCGCGGAGCGCTTGAGAAGGGGCCATGGCTGTCTATTACTGCTCAAAATGGTgcggttgtttttgtttgctttttgaatTCAAGAGTTTAGGTTTAAGCCTCATCCTGAGTGAATATTTAAGGAaaggcaggcagacaggcagtgCTACATACTTACTGGTTTTGGACATATTGGGTGGAGGGGTaggatttatttccatttttgaaaatgaaaagcaatatcTATACacctttaaatcatttttaaaactgcactTAACCCATAATGAAATTATtagaactgaaaatgaaattcaattGGTGAGAGTCCTTGTATGTAGAAAGTGCATTTTTGCCTTACACTGTTCTACACAATTTGTTACTCAATATGGTGTTTTCAATTTGTACAGAATAGCTAGAATATTCTATTAAAAGTTGTGCAACATGATAGCAGTTACTGTCTTTTTTGcgtgtattcattttttgttcttgcattaaACCAGCATAAACCTTTCCTCTTTGATGTAAAGATGGTCTGTTTGGAAAATTGTCGTGATATTTGAGCATTGTAGAAAGGGAAACGCCCTCTCTGGAGCTTATTTTGTCTATTAATAAAGTTTTATATTTGCCCAGTTCAGGGATTACCATTAcagttatttcattttttttttttttttttttttgcctgtatCACAAACACTAATTACCCTCCGTCACACCTTCAAGGATTAAATGGATCTTCGAAACCTACCAATCAAAGCAGCTCTTATTTTCTTGTCACCACTGAACAGAGGTAGCTGGGGCAAAGGGTGGAAAATTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29141 lncRNA downstream 167997 16068083 ~ 16069464 (-) True G23250
TU29111 lncRNA downstream 436509 15734625 ~ 15800952 (-) True G23225
TU28948 lncRNA downstream 1105863 15131388 ~ 15131598 (-) True G23105
TU28944 lncRNA downstream 1212716 15024241 ~ 15024745 (-) True G23101
TU28842 lncRNA downstream 1757262 14478596 ~ 14480199 (-) True G23011
TU29252 lncRNA upstream 79262 16378518 ~ 16380291 (-) True G23344
TU29290 lncRNA upstream 361625 16660881 ~ 16662665 (-) True G23379
TU29321 lncRNA upstream 407033 16706289 ~ 16709180 (-) True G23397
TU29362 lncRNA upstream 649196 16948452 ~ 16948745 (-) True G23429
TU29364 lncRNA upstream 664711 16963967 ~ 16964267 (-) True G23431
AMCG00007362 mRNA downstream 248838 15979313 ~ 15988623 (-) True AMCG00007362
AMCG00007363 mRNA downstream 298931 15934147 ~ 15938530 (-) True AMCG00007363
AMCG00007361 mRNA downstream 347096 15874967 ~ 15890365 (-) True AMCG00007361
AMCG00007358 mRNA downstream 461949 15756293 ~ 15775512 (-) True AMCG00007358
AMCG00007359 mRNA downstream 481211 15750108 ~ 15756250 (-) True AMCG00007359
AMCG00007365 mRNA upstream 22322 16321578 ~ 16345580 (-) True AMCG00007365
AMCG00007374 mRNA upstream 86129 16385385 ~ 16444113 (-) True AMCG00007374
AMCG00007373 mRNA upstream 156277 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007375 mRNA upstream 170211 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007376 mRNA upstream 366295 16665551 ~ 16670635 (-) True AMCG00007376
TU28749 other downstream 2291396 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 2885388 13351517 ~ 13352073 (-) True G22838
TU28289 other downstream 6047257 10187314 ~ 10190204 (-) False AMCG00007289
TU27830 other downstream 7841237 8393196 ~ 8396224 (-) True G22200
TU27501 other downstream 8730586 7499447 ~ 7506875 (-) True G21942
TU29239 other upstream 21741 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other upstream 21781 16321037 ~ 16322651 (-) False AMCG00007365
TU29265 other upstream 230918 16530174 ~ 16621905 (-) False AMCG00007375
TU29633 other upstream 1756214 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2477104 18776360 ~ 18777638 (-) True G23838

Expression Profile