RNA id: AMCG00007376


Basic Information

Item Value
RNA id AMCG00007376
length 3123
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00007376
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16665551 ~ 16670635 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATAACCTGCCTGTGGATTCATTTCAGGTGAAGAGCGAAGGGCCCAAGTTGGTGCCCTTCTTCAAGGCcacctgtgtttattttgtccTTTGGCTGCCAACATCCAGCCCTTCATGGTTCAGCGCCCTCATCAAGTGTTTGCCCATCTTCTGTCTCTGGGTCTTTCTCTTGGCCCATGGCATCAGCTTCTTAGGAGCCCACTCCAGTGCCCGAAAAATTCTGGCAGGCCTGATCTTCTCTGCTCTGGGAGATGCCTTTCTGATTTGGCAAGAGCAGGGTTACTTCAGTCATGGGCTCCTGATGTTCGCCATCACTCACATTCTGTACTCTTCGGCCTTTGGGATGAAGCCACTGAATCTCCGGGCTGGATTGGTGATTGGCATTGTGTCTGGGCTGAGCTACGCTCTGCTGTACTCCTATTTGGCAGGGCCTTTCACCTACCTGGTGGCGGTCTACATCGGCCTGATTGGCTTCATGGGTTGGAGGGCTATCGCTGGAGTGCAGCTGTCCGATGACCTCTGGACGTGGACCAAACTCTCGGCCTGCCTCGGGGCCATGCTCTTCATGGTATCGGACCTCACTATCGCCGTCAACAAGTTCTGCTTCCCAGTACCCCACTCCCGTGCCATCATCATGGCCACCTACTATGCGGCACAGATGCTGATCGCCCTGTCTGCCGTCGAGTGCCAGGATGAAGACCACCCCAAGAAGATGGCATGAGGCTGCTGCCGGGCACAGGCTGCAATGCCAGGGACCCCTTCTTTCAGGCAAGGTGTTGCCCATCTGATTTTCCTTTACCGGATGTCGCAACTTCTGCCAAAAAAATGCAACCAAACCCAACAACAttgccccctctccctctgctctGCTTCCTATCTGTTCGGCCAAGCggtccatttttttatttggggtGGTTGGAATTGTTTTTAAGACAACGCATCGATTGAATGGAACACATTAGCCATGATGGAATGCACCAGTCCCAGGTGCCCACCAACCCtcttcccttccctctctccaaCTCCTCTGCCCTTCCCACGCCCTATTTTCAATATTGTGGTCCAATGATAACTGGAATTTCAACTCGGTGCCATTGCCAGGCACCCCTTGTGATTGTGCTGTTATGGGAGAAGTTTTAttcttttagatttttctctttctctttcttttatttggCTTGCTCTCTACCTACAGTAGACTGGTTAGACcactctgtgctgctgtgatgTTGTGTGGAATGCAATGTTCTCAATGAAGAcctttattttcacttttaagCTAGTTGACTAGACTTCCTTTCATATGCCTAGTGCTACTGAAAACAGACTGTTGTCTTCATATTGTtttgataatattttttttcttttacattatgTGCAGGTTTAGTGATCCAATCCATAGATTCCACTCATCACAGTAGAGTTTTCAATGCTTGGGATGTTGGATGAGCATTTCTTTTCAGATTAGGGTCTCTTTTTGATCAGGagctggtcctctcctgcctcttAGTATGATAGACATGTGAATCGGAGTGACAGTGTGCATTGACAATTTGAAAAAATTTACTGCGGTACAGAAAAAAAACCAAATACCTTAGCCCAGTTTCAGCAGTGTTTATGTGCCCTACAATACCACCCTTCCAGTGTATTGTCATATTTTCTGCTGGATTGACATTTCAGagtttctgtttcttcttttttgttgaAGAGAAAATTCCACCCTCCCCCCCGCCTCCCTACAGTCACTCCCACAGGtcaaaatattattgaaaatgtcactttttttgtttgtttgttactaAAACTAAAGCATGTCAAGTTTTGTAAAGTGTTTGCGGGCACCCTCACCGCTGTTAACAACCTATGCCTGCCCACTCTGCCACCACAGTGCTGCAAGAGCCTGCTGAGAACACATTGGGGGATTTGGACAGAGACTAAAGCAGCAAGGAGACTCAAGCAAGGACCAGTTACAGTATTTTTgataacatttcaaaacacatttatattcataaaatGCACAAGTAATGCATCTCTAATGTAGTCACTTAGGGCTAGGAAGAAGATTTAAGCTAAGACTGGGAACACATTCAACCACCAAGGACCGTGATTTTAGACCTTTCCAGTTGGACAGCTGCCAAAAAGGGGGTCTCTAACAAAAACTAAACGGAAGGAAATACTGCAGTACATTCTGCTGTTTCAGAGGAACCTCACTGTGACCACCATCAATCCACCCCACAGAACACAGTAGCATCaacttattttgtaatgttttttttatgttttatgtgtcACCTATTACAGGTTTCCAGAATAGATTGATGGTATTCGCAAGTGTCACAAAACAACCCTGCTTGTTTGTCCTCAAAAGTATTTCTTAATTGTGCCCTTTTCTGGCACACAACTCAGGATTCCTtcgaaataagtatttttttcaagaTTGTGTTCAGACGCTGTAATATATGCAGACGTTTTGAATCGGTgtggtttgaaaatgtttgtgtttgaatcAAGATGGCGCTACTAAGCACTCTATTGGAAGTCGGACTGATCGGAGGAGTGAAGATTCTTCACTATGTAAACACTGCCGATGTTAAGCGATCTTCAGCTGAAGTGCTTCCACAGGGATTGGTCAGATAATTTCCCTGTGTTAGTGTTGGCAATGACAGTTAATATGTGCTGTCTTTATTGTCTCTCTTAACCAGTGCAAATGTAGATCCCTACACTTCATAACCTCGATCTTCAGCCAGTTACTgacattatttagtttttgtctgTTGACGcctatttttgtttcatgttttttatgtttattttggttttagttgACAGtcttttatatttagaaaagaaCGCACAGGATAAAGGACTGGAGTGAACTTTAATCCGATCTCTACCTTTGTCGTTAATTTAGTATATTCACTGGTCTGATtgtcttcatgtttttttcatttgtcttttaaCTCTGGCACTTATCGGTGCcctttgttcagtttttgaTCCATTGAATTGTTCCTAAAGTATCTTATTTCTCTTACTGTAAAGTAGGAATTCTTGCAAATGTCCAAAAAAATAACTGGAATTGTGATTTATACCACCTcgaatttttttcttttttttttct

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29290 lncRNA downstream 2886 16660881 ~ 16662665 (-) True G23379
TU29252 lncRNA downstream 285260 16378518 ~ 16380291 (-) True G23344
TU29199 lncRNA downstream 366295 16237461 ~ 16299256 (-) False AMCG00007366
TU29198 lncRNA downstream 366295 16291541 ~ 16299256 (-) True AMCG00007366
TU29141 lncRNA downstream 596087 16068083 ~ 16069464 (-) True G23250
TU29321 lncRNA upstream 35654 16706289 ~ 16709180 (-) True G23397
TU29362 lncRNA upstream 277817 16948452 ~ 16948745 (-) True G23429
TU29364 lncRNA upstream 293332 16963967 ~ 16964267 (-) True G23431
TU29373 lncRNA upstream 322280 16992915 ~ 16993435 (-) True G23439
TU29374 lncRNA upstream 339154 17009789 ~ 17010047 (-) True G23440
AMCG00007375 mRNA downstream 135327 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007373 mRNA downstream 197864 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007374 mRNA downstream 221438 16385385 ~ 16444113 (-) True AMCG00007374
AMCG00007365 mRNA downstream 319971 16321578 ~ 16345580 (-) True AMCG00007365
AMCG00007366 mRNA downstream 351519 16297002 ~ 16314032 (-) False AMCG00007366
AMCG00007380 mRNA upstream 41457 16712092 ~ 16732845 (-) True AMCG00007380
AMCG00007384 mRNA upstream 300667 16971302 ~ 16978773 (-) True AMCG00007384
AMCG00007387 mRNA upstream 379081 17049716 ~ 17058918 (-) True AMCG00007387
AMCG00007386 mRNA upstream 479537 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007388 mRNA upstream 516203 17186838 ~ 17190438 (-) True AMCG00007388
TU29265 other downstream 43646 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 342900 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 342900 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 2719486 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 3313478 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 1384835 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 2105725 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 3244511 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 3660878 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 3800476 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile