RNA id: TU29282


Basic Information

Item Value
RNA id TU29282
length 1827
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00007379
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16624390 ~ 16662700 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAGGTtgcattgtatttgcattttattttgattaattcacATTCAATGCAGTTTCACTACAAGTAAGGAACAATATGGtccttatttttatatgtatatgtatatgtatgtgtatatgtatatatacacacacacacacatatgttcTAGATTATAGTAAGGAGAATACACACAGGTGAATATTCAGGATAACAAGGCAGAATGTTGTGATATATTCAAGCCAtggtctgaaaaaaaaaaaaagaaaaagatgtcTCCCTGTTACTCACAGCTCCCTGTTTAAAGGCATCTGTTAAAAGGGCAGCACAGCACACGCTCATATTTCTTCTGGCTCAGCTAAAAGGTGTAGTTCGTTGACTTACAaccacaattaaatacattttttttttatagatctGAATAAGAAGTGGCATATCTCAGTGAACACAGCCTGACAGTTCCCAGTCACTGCCATTGCAGgcctggacacagagaggacggCACtctttgacaaaaaaaatagcaaacacAACAGATTGCCTATTTGGGGAATACTGATGCACTGAGTGCTAGATTTACCAGCCTACATCAGATATTTAACTTTCATTTCCAGTACGCCATATCTAACTCTATTGAACGTTCTCTATACTTCTCAATACAGGAAATATCCAAGAAGCTTACAGAAAGAGGGGGTCTCAGTGATTTTACACATTGAtaacaatttgtttgtttaaagtgtaAGAGGAATCAGATAGCCTGTAATGTCCTAAAATAATGAGGTTATGTTGGCAAACTTCAACTCTTTGTTAGGTTTCTCAAGCATCTCCTCATGATCTTTTGCACATGTATTCAGAATACAGGGGGCCTTTTGGTTTAGAATAAAAGCTGTActggattttaaaacaaatccctttTCCCCATTGTGCCAATGCAGATAGGGCTTTCAAGACACTACTAAAACCTAGAATCACTGTGGTCTTTCCTAGTTGAAGGATTTCACTCAGTCTGTTTTATTCCCCAAATGACAAGTTGAATAGCTTAACCATAGGTTTGCCTTTATGGGTCAATATAAAGCCATCAGCTTGCATCTAAGCTTATAACTCTGTTTCGATATATCTTGTGTCATTTGCTGCACATATTTTAGcaaaaaaagtgaaactgaGAATCTGTCTTCAAGAACAGAAGATAAGCTGCACACTTCGACATCTTTTTAAAGTATTCAGAAATGAACTCCAGAACTTAGGAAAGGAAACAAACGCAGGATGTGAAAGAAAATAGGAACCTGAGatgcaattatattatttaattggggGCTATTAGCCTTGAGACCCTACTTGAAAACAAGCTTTTTGATTACACTTGTGACTCTTCCAATTAATTCATACAGGTATAtgcaataatattaaaatatttatgtatacatttttactggTATCTAGCATTTGCTTCTCCAAAGTCGTAAATGGTATTGAGCAGCCAGTGGTCTAAGCATCTGACATTTTCTCAGAAGGCTTTACAAGGTTTGCAAAAGAAAGAGGTAATGTGCCCtcattacttttaaaatcagTCAAGGCACAAGGCCGAAAAATGTCACCACAGTAAAATTACacgagaaggaaaaaaaacaataacaacaaaaaacatcattTCTTGCATTGTGAACAGTAGTTTGTCAGTTCTCCAGTCATTTTAAAGACCCCCGTGATTGAGGTTTGGTGGACTCCTAACAATGAAAGACGATTCCAAGGGAGTGGTGGATGTTGGGGTGTCAGGTGAGCTGGAGTGACCCCACCCTGCTGGTTTCTAGATCCTATAttcatatctatctatctacataTTCATAtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29225 lncRNA upstream 249663 16356690 ~ 16411211 (+) False G23322
TU29224 lncRNA upstream 249663 16410773 ~ 16411211 (+) True G23322
TU29191 lncRNA upstream 364866 16293104 ~ 16296008 (+) True G23294
TU29158 lncRNA upstream 503527 16152460 ~ 16157347 (+) True G23263
TU29063 lncRNA upstream 593792 16030764 ~ 16067082 (+) True G23189
TU29365 lncRNA downstream 305162 16967862 ~ 16968068 (+) True G23432
TU29366 lncRNA downstream 307105 16969805 ~ 16973419 (+) True G23433
TU29383 lncRNA downstream 385230 17047930 ~ 17048318 (+) True G23449
TU29444 lncRNA downstream 689872 17352572 ~ 17352790 (+) True G23497
TU29465 lncRNA downstream 812263 17474963 ~ 17479749 (+) True G23515
AMCG00007372 mRNA upstream 279658 16347511 ~ 16381216 (+) True AMCG00007372
AMCG00007371 mRNA upstream 357756 16301868 ~ 16303118 (+) True AMCG00007371
AMCG00007367 mRNA upstream 394345 16249097 ~ 16266529 (+) True AMCG00007367
AMCG00007369 mRNA upstream 432851 16225938 ~ 16228023 (+) True AMCG00007369
AMCG00007368 mRNA upstream 438838 16190187 ~ 16222036 (+) True AMCG00007368
AMCG00007377 mRNA downstream 20976 16683676 ~ 16692219 (+) True AMCG00007377
AMCG00007378 mRNA downstream 34572 16697272 ~ 16709296 (+) True AMCG00007378
AMCG00007381 mRNA downstream 99017 16761717 ~ 16765628 (+) True AMCG00007381
AMCG00007382 mRNA downstream 128935 16791635 ~ 16799244 (+) True AMCG00007382
AMCG00007383 mRNA downstream 145564 16808264 ~ 16836323 (+) True AMCG00007383
TU28988 other upstream 1372914 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 2171182 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 6047770 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 7161146 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 7949563 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 1536068 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 1544378 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 1627408 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 1905069 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 2388642 19051342 ~ 19056133 (+) True G23893

Expression Profile