RNA id: AMCG00007387


Basic Information

Item Value
RNA id AMCG00007387
length 813
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00007387
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17049716 ~ 17058918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCCATGTTATAGTAACCAGTCCTTTTTCAAAGGGGCTCGGGCGAGGCTGAGAGCAGAAGAAAGGACCATGGAGGGGGACTGTCTGAGCTGCGTCAAGTACCTCATGTTCGTCTTCAACTTCTTCATCTTCCTGGGGGGCTCCTTCCTCCTGGGGGTGGGGATCTGGGTGCTGGTGGACCCCACGGGATTCCGGGAGATTGTGGCAGCCAATCCGCTGCTCTTCACCGGCGCTTACATCATCCTGGCCATGGGCGGCCTGCTGTTCCTGCTGGGCTTCCTGGGCTGCTGCGGGGCCATCCGCGAGAACAAGTGTCTGCTGTTGTTTttCTTCATGCTAATTCTCATCATATTCCTGGCAGAGCTTGCAGCCGCCATCCTCGCCTTTATATTCCGAGAGCATCTGACCAGAGAATACTTCACAAAGGAGTTGAAGATGCACTATCAAGGATATAACAACACTGATGTCTTCACTGGCACGTGGAATGCCATTATGACCACATTTGACTGCTGTGGGGTGAACAATCCCGATGACTTTGAGGAGAGCCTTTTCAAACTCCTCAATCCTGATGACATGGTCCCAGAAGTCTGTTGCAAGAGGAACAATCACCCTGGAGATGGGACCTACATTAGCAGAGAGGAGTGCCTCATGGGTAGCATGCTGTTCCGCAACAACAAGGGATGTTACTCGGCTGTTGTGGACTACTTTGAGACATACATTTACCTTGCTGGAGCTCTGGCCATTGTGGTTCTGACAATTGAGCTTTTCGCCATGGTGTTTGCTATGTGCTTGTTTCGGGGAATCCAGTAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29382 lncRNA downstream 10731 17032928 ~ 17038985 (-) True G23448
TU29381 lncRNA downstream 18034 17031385 ~ 17031682 (-) True G23447
TU29376 lncRNA downstream 33450 17016022 ~ 17016266 (-) True G23442
TU29375 lncRNA downstream 34045 17015338 ~ 17015671 (-) True G23441
TU29374 lncRNA downstream 39669 17009789 ~ 17010047 (-) True G23440
TU29430 lncRNA upstream 253051 17311969 ~ 17314094 (-) True G23487
TU29484 lncRNA upstream 416300 17475218 ~ 17479751 (-) True G23532
TU29492 lncRNA upstream 429202 17488120 ~ 17488416 (-) True G23539
TU29504 lncRNA upstream 447591 17506509 ~ 17509199 (-) True G23548
TU29506 lncRNA upstream 452606 17511524 ~ 17511794 (-) True G23550
AMCG00007384 mRNA downstream 70943 16971302 ~ 16978773 (-) True AMCG00007384
AMCG00007380 mRNA downstream 316871 16712092 ~ 16732845 (-) True AMCG00007380
AMCG00007376 mRNA downstream 379081 16665551 ~ 16670635 (-) True AMCG00007376
AMCG00007375 mRNA downstream 519492 16469467 ~ 16530224 (-) True AMCG00007375
AMCG00007373 mRNA downstream 582029 16455533 ~ 16467687 (-) True AMCG00007373
AMCG00007386 mRNA upstream 91254 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007388 mRNA upstream 127920 17186838 ~ 17190438 (-) True AMCG00007388
AMCG00007389 mRNA upstream 141942 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007393 mRNA upstream 268422 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007392 mRNA upstream 294194 17353112 ~ 17371256 (-) True AMCG00007392
TU29265 other downstream 427811 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 727065 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 727065 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3103651 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 3697643 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 996552 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1717442 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2856228 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 3272595 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 3412193 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile