RNA id: AMCG00007392


Basic Information

Item Value
RNA id AMCG00007392
length 4291
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00007392
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17353112 ~ 17371256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCGAGTAAGATTTCAAACCATTGCAGTCTCCTGCTTGTCGTCTCAAGGCGGCGGAACCGCAGACGGCACTTTTGTAGAAATATGCACcgatttcagtatttttaagaCCCGGCGTGGATTTTGGTGGAGGCTAATGATACGCCTAATCGCCGGGGTCTATTTCTTGTCTACAGCAGCCGTGCTGCGGccttctctcctctcccgtGCCGGCCGCCATCTtgaattttaatgttaattttctgGAAATTTTTGTTTCCTCCGATTTTTTTCCGAAGGGATTTCATGGCCATTCTGGACCCGTAGGACGGAGCATACACCCCCCAGGAGAAAGGATAAAGGGAAGGACCTGGGCTTACCTCTCCCACTCTACAGGGCATCTTCAAAAACGGAGACTAAATGCAACTAGATCAGGCTGTTTGTTGGTATGAAGTGGTTGGGAGAATCCAAGAACATGGTATTAAATGGCAGGAGACATGGAAGCAGGTTCTCCAATGAACAGACTCCGAATCAGTCCAGGCTGCAGCACTCTCAGAGAGCACACCTGAGGCACAGCAAAAGCTCTCCAAGTAGCAGACGATGTAGTCGACGTTTCAGTGGTGCTCCCCTAGAGGCAGAGAGACGCTACGTCCCCTCCTCGGGAATGACGGCCAAAGAGCTATGTGAAAATGATGATCTGGCAACCAGTTTGATCCTTGATCCCTACTTAGGTTTTCAAACACATAAAATGAACACCAGGTTTCGCCCTATTAAAGGAAGACAAGAAGAGCTGAAGGAAGTGATAGAGTACTTTAAAAAACACGACAGTTTGGAGAAAGCATTCCACGCTTTGACTGCAGGAGATTGGGCCAGACACTACTTTCTTCACAAGACTAAAGCCCAAGAAAAACTCTTCAAAGAGCATgtattcatttatttacgaATGTTTGCCACCGATAGTGGTTTTGAAATTCTTCCTTGTAATCGTTATTCTTCAGAGCAAAATGGAGCCAAAATTGTTGCAACAAAAGAGTGGAAAAGGAATGACAAAATCGAGTATCTGGTTGGCTGCATCGCGGAGCTGTCGGAGAGTGAGGAGAACATGCTCCTTCGGCACGGGGAGAATGACTTCAGCGTCATGTACTCCACCCGAAAAAACTGCGCACAGCTGTGGCTCGGACCAGCCGCCTTCATCAACCACGatTGTCGACCAAATTGCAAGTTTGTCTCGACCGGCCGAGACACCGCGTGCGTCAAGGTCCTAAGGGACATTGAACCTGGGGAAGAAATTTCCTGTTACTATGGTGATGGCTTCTTCGGTGAAAACAACGAATATTGTGAATGCTACACTTGTGAGAGCAAGTACGGACTAAGAGAAACAGACAAGCGGCTGAACCGGCTCAAGAAACTGGGCGAGGGCAGCAAGAACTCGGACAACCATTCTGTCGGCTCGCACACGGATGCAGACAATACTCAGGGAATGCCTAATgcacatgcatgtatCTGCAAGGAAAAGATCATCATCCAGCATGAAAAAGTTCAACAAAAACAGGACTCTGACCAGACAGTCTTTATCAAGAACTTCTACTTCTACCTCATCTTCTAAACAAAGTCATATGAATAATTCCAGGGTACCAAAGAGACTAAAATCAAAGCCTTCGAAGCCTTTGCTCTCAAAAGTAAGGTTGAGGAGTCAGTGTCGGAGGCCGGAGCAAAAGACTTCTTCAAGCAAACTTGACATGGGAAGTTTGGTTCTTAAGGAACCTAAAGTTGTTCTTTACAAAAACCTACCagtaaaaaaagagagagaaactagGGGACCAGTCGGTGTGGAAGGGTCCAGTGGGTGCTTGACCCGCCAtgctgcaaaagaaaacaaacacaatccttTAAAAGGTGCTACTGTATATGACGGGAGTTTATCTTGCACTTACAGAACTCGGAGGTCGACAAGAACTAGGCTGAGTGTGAAAGAGACCTCTGATATAAAGCTTGAACCAAATACGATGGATGGGCACGCGCACGGCGGGGTCGTGATTAAAACTGAGCCGATGGACTTCGAGGAGCACATGTGCATGACGCGGGAGCTGCAGCTGAGCGAGTCTTTGCCCCAGCTGGAGGACAGCTGCCAGCGGAACGGGGCGTGCTTGCGCAGGAGGCGACTGTCACAGGTCAAGACAGACAGAGCGATTAAGTTAGAGGAGAGGGGCTCCTACAGTGAGGCGTACATTCAGGATAGCGTCCCTGACTTAATGAGCCCATCGTGTGCCAGTGACATAGGGGATTGTGGGAAGATGCTGTTAGGCTTACCTGATAGGCGACAGGATTACAATGGGGCGGCCAATGGGGGAAAACTGATGGCAGTAGATAAGGGCAAAACCAGCTGCCGAGCTGTAGGCAAAGGTAAAAAAAAGCGAAGGATCACGCGCTACGATGCACAGCTTATCCTAGAGAATAGCTCTGGGATTCCTAAACTCACTCTGCGCCGGCGCCGTGACAGCAGTAGCAGCAAAAAGAACGAACAGGAGGCCGACGTCATGAACTCTTCAAAGATCAGCATCAAGTTTAGCAAAGACCACGACAAGGACAAAAGCAGCTCGTATGTAGCAAAGCTGAACAATGGCTTCAGCTCAGGAGCCAACAGCAACCCAACAAAGCTTAAAATCCAACTCAAGCGGGAAGACGAATGCAGGGGTGTGACTCAGATGCATTCGGAGGAGGTGACCGGAAACGGCCTCCCTGTAAGTGAAGAAGGAGAGGTTTATGATCACAGGGGAAACGGGGCCAGGAACGCAGAGGAGGAATCTTCATCGGACGACGAGGACGACGAGGATGACGAtgacgaggacgaggacgatTACTACGACGAGGAGTTTGAGGATGATTTCATTCCACTTCCTCCGGCGAAGAGGCTCCGGCTCATTGTTGGGAAGGACTCCATTGACATTGACATCTCCTCAAGGAGAAGAGAGGATCAGTCATTGAGGCTTAATGCATAAGCTGTGGGTCTTGGACCTTAATGTACATACACTTTTCCAATCAACTGtgtgttgattaaaaaaaaaaaaaaaaacatgagaaaaaaaagaaacaaatgaaaaataaaaaaaatcaactcaAGAACTTTCTGTAAATTTTAGTGATGGCACTTCTctattgtttattcattatcAACATAAATATTGTAGAAAGTGTACAGTATATTAACTCTTCCTAAGTGATATGTGCAgatttttattgtactttttttagCCTTATAATGTGCAATTCTCAAAGTCTGTTCAGAGCCAGGCTTGGTTGTGGAATAAAGGCTAAAACAGATCTATCCAGCTATAAACTTATCAATGAAATCATTTGGAAACATGAGGAAGCTAACCTAGATTTTACAAACTCCGAACAGTTTATCTTAGTTTTCATAATGGCagcatttatatgtatatttacttaCACTGCATCGCCAGACATATTTGGCAACAGATGATGTACTGAATGCCTCTGGCTGCAGGTTTTACTGTTGAACAGATCCTTACATTGCCTGATCACTTATCTCTCAGAACCAccttattaaacatgttaaacatcTCACAGCTAAGATTCATCCCGGTGTTTTCTCTGTTTCTGGGAAAGCAGTTCAAGAGAATTTGGGGTGTTTGGTGCTTGGAATAGCTGTATTTGTTCAGTAAAATTGTGGTATccctaaaaaataaatcctgtttaGTAGTTCCCAGTGGCGTAGTAAAATAACACTTGATTCATTGATATTGTTCCACATCCTTGTCCTTCCCAAAAATATTTCTGGAAAACATGGTTCAAAGCCCTTGTGTAAAGCTGGTGACTGTGGCAGATCCTGCATCAGAATAATTGGCAGAACATTTCTGTGCAGCTATTCTGCAGCCAATGAAAACTGATCTGAATGCAGTTACCCACCCTTAGACTTTCTGTATATCATTTTAAGCagtattttttacatatatgcTGCAAAAGAAATGAAGGGATTATAGTTGGATTTATAAtcccttcatttttttatgtcccGTTCATATCACCAGCAGACCGTTGCAGCTTTGAACTTTGCTAAATGTTTCTCCCCTCCTTGGACTTGTCCATTTTACACTGTATGCTGTCCCAAGTGTACTGTTTGTGGTCTTTGTTAGTAGCCAGCTGTTGGTTGGAATTccaattgatttattaaaaggaaaaaaaaatacttgtgaaTAGTTTGCTGACATTTTAGAGCATTATGTGTACAAGGGTagcagtatacagtatacagaaaAGGGCAGTGCTGATATTGTCCACCATGTAAATCATG

Function

GO: NA

KEGG:

id description
K11429 SUV420H; [histone H4]-N-methyl-L-lysine20 N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29430 lncRNA downstream 39018 17311969 ~ 17314094 (-) True G23487
TU29382 lncRNA downstream 314127 17032928 ~ 17038985 (-) True G23448
TU29381 lncRNA downstream 321430 17031385 ~ 17031682 (-) True G23447
TU29376 lncRNA downstream 336846 17016022 ~ 17016266 (-) True G23442
TU29375 lncRNA downstream 337441 17015338 ~ 17015671 (-) True G23441
TU29484 lncRNA upstream 103962 17475218 ~ 17479751 (-) True G23532
TU29492 lncRNA upstream 116864 17488120 ~ 17488416 (-) True G23539
TU29504 lncRNA upstream 135253 17506509 ~ 17509199 (-) True G23548
TU29506 lncRNA upstream 140268 17511524 ~ 17511794 (-) True G23550
TU29524 lncRNA upstream 210350 17581606 ~ 17583440 (-) True G23566
AMCG00007393 mRNA downstream 4224 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007389 mRNA downstream 115386 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007388 mRNA downstream 162674 17186838 ~ 17190438 (-) True AMCG00007388
AMCG00007386 mRNA downstream 184935 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007387 mRNA downstream 294194 17049716 ~ 17058918 (-) True AMCG00007387
AMCG00007399 mRNA upstream 150533 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007401 mRNA upstream 221045 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007405 mRNA upstream 452638 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007406 mRNA upstream 572515 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007411 mRNA upstream 591465 17962721 ~ 17978522 (-) True AMCG00007411
TU29265 other downstream 731207 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1030461 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1030461 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3407047 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4001039 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 684214 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1405104 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2543890 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2960257 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 3099855 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile