RNA id: AMCG00007399


Basic Information

Item Value
RNA id AMCG00007399
length 2010
RNA type mRNA
GC content 0.50
exon number 20
gene id AMCG00007399
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17521789 ~ 17530599 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTCACAGCCACGGGGATCATCAGCTGTCTCTAGAAAAGGCTAAAGAAGCTGGGAGGAAAGAGAGAGCACTGGCAAGACACCGGGAGCAGACTGGATCGTCAAAAGATGTCAATCTGGACTTGACGTATTCTttcttgTTGAATTTGGCAATCCAGTATTCAAATAACGGCATGTATACAGAGGCTCTGAATACATACAAAGTGATTGTGGAGAGCAAAACATTCCAAAATGTCGGGAGGATAAAAGTGAACATGGCCGACATATTCTTCAAACAGAAGAATTATCCCAAAGCACTAAAATTCTACCGCATGGCTGTGGATCACGTTTCTCACCACAACAAGGAAATGCGTATGAGAATCATGGAGAACATCTCCGTCGTTTTGATCAAATTGGGAAAGTATACTGAAGCAATCACTTCAATGGAGGACATCATGATGGAGAGGCCAGACATAAAGACGGCATCCAATCTGATTGTCTGCTCCTATGGTGTGGGAGATTCTGAAAGAATGAAGAAAGCTTTCCAGGAACTTGTCTGTGTTCCTCTCGGTATTGACGAGTACTTGCCACCTAATgatGACCCAAACGCAAAGCTCGTGTTTGAGGTCATTCAGAACGACCAGCTTCGCcaaatggaaagagagagAAAGGCTCTGGCAGAGAAATACATCATGGCTTCTGCCAAGCTCATTGCCCCAGTGATTGAACTGTCCTCCGCAGCAGGATTTGACTGGTGTGTAGAAGTGTTGAAAAGCTCCCAGTATGCAGAGCTGGCAAATGACCTGGAAATGAGCAAAGCTGTTGCATCCTTGAGGCATAAGGATTTCACTCAGGCCGTGGAGATGCTCAAGGTGTTTGCGAAGAAAGACAGCCGGGTGAAAAGTGAGGCTGCCAGCAATCTGTCCGCTCTTTATTTCCTGGATAAAGACTATGGCCAAGCAGAGAGATATGCAGACTTGGCCAGGTCTGCAGACAGATACAATCCAGCTGCCCTGGTCAGCAAGGGGAACACGCTGTTTGCAAAGAGTGACTACAAGAAGGCAGCAGGGTTTTACAAGGAAGCTCTGAGGAATGACTCCTCCTGCACTGAGGCTCTCTACAACTTAGGCCTGACCTACAAGAAGCTGAGCTTGCTGGAGGAGGCCCTCGGCTGCTTCCTGAAACTCCACACCATCCTGAGGACCAGCGCCCAGGTCATGTACCAGCTGGCCAACCTGTATGAGATGCAGGGGGATCCACACCAGGCTATAGAGTGGCTCATGCGGCTGATCAGCCAGGTGCCCACTGACTCGCAGGTTCTGGCCAAGCTGGGTGAGCTGCACGATGATGAAGGAGACAAGTCCCAGGCCTTCCAGTACTACTACGAGTCCTTCAGATATTTCCCCTCAAACATCGATGTGATCAAGTGGCTGGGAGGCTACTACATCAGTACACAGGCCTGGGAAAAAGGAATTCAGTACCTGGAAAGAGCTGCCCTTATTCAGCCGACTCAGGTGAAATGGAGATTGATGGTGGCCAGCTGCTACAGGAGAAGCGGGAACTACCAGAAGGCACTGGAGACCTACAAAGACATTCATCGCAAATTTCCTGACAATGTCAAATGTCTGCAGTTCCTGGTTCGCTTCTGCTCCGCTCTGGGTTTGAAGGAGGGTCAGGACTATGCAACCCAGTTGAAGAAAGTAGAGAAGATGAAGGAGAGAAGAGAGCAGCGTGTGAAGTCTGGCAGGCAGGGCAGTGTCCGTGGGCGCAGAGAGGGCAGTGCCAGCAGTGTCTTTCCTGAGAGTAGACACAGCCCTGTCCTGGAGCAGGTCAGAGACAGTGGGCACTGCAGCTGTGGCACCAGTGCCAAGAGAGAGCGGTTGAGTGCCATGCTGAAGTCCCTGCCAGATGCCTCGTACATCGATCCCCTTGGACCACAGATGGAAAGACCAAAGACGGCTGCCAAAAAATGGGCTGAGGAAAACTATTTTGCCAATGAAGAGCTGGGACGTGACCTTCTGCCTGAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29506 lncRNA downstream 9995 17511524 ~ 17511794 (-) True G23550
TU29504 lncRNA downstream 12590 17506509 ~ 17509199 (-) True G23548
TU29492 lncRNA downstream 33373 17488120 ~ 17488416 (-) True G23539
TU29484 lncRNA downstream 42038 17475218 ~ 17479751 (-) True G23532
TU29430 lncRNA downstream 207695 17311969 ~ 17314094 (-) True G23487
TU29524 lncRNA upstream 51007 17581606 ~ 17583440 (-) True G23566
TU29539 lncRNA upstream 127753 17658352 ~ 17658558 (-) True G23580
TU29583 lncRNA upstream 243952 17774551 ~ 17774846 (-) True G23620
TU29587 lncRNA upstream 291168 17821767 ~ 17823318 (-) True G23624
TU29596 lncRNA upstream 375502 17906101 ~ 17906408 (-) True G23629
AMCG00007392 mRNA downstream 150533 17353112 ~ 17371256 (-) True AMCG00007392
AMCG00007393 mRNA downstream 172901 17327340 ~ 17348888 (-) True AMCG00007393
AMCG00007389 mRNA downstream 284063 17200860 ~ 17237726 (-) True AMCG00007389
AMCG00007388 mRNA downstream 331351 17186838 ~ 17190438 (-) True AMCG00007388
AMCG00007386 mRNA downstream 353612 17150172 ~ 17168177 (-) True AMCG00007386
AMCG00007401 mRNA upstream 61702 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007405 mRNA upstream 293295 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007406 mRNA upstream 413172 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007411 mRNA upstream 432122 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007409 mRNA upstream 449643 17980242 ~ 17991860 (-) True AMCG00007409
TU29265 other downstream 899884 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1199138 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1199138 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 3575724 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4169716 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 524871 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 1245761 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 2384547 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2800914 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2940512 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile