RNA id: AMCG00007404


Basic Information

Item Value
RNA id AMCG00007404
length 4005
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00007404
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17701160 ~ 17729279 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCAGTGCGTCTCCCACAGTGTACATCACACTGTTAGTGTTGCCGGCCTCTCACTCACCAGTGAGAGAGAGTAACTGGAATAGCTGCCGTGAAGATGGCGAGGTGAACACCGACTGGAACAAGCATGATGACCGGCTGATGAAGGCGGTGGAGCGCGGCGAGGTGGACAAGGTGGCAACTGCGCTCACCAAGAAGGGCATCATCCCCACCAAGCTGGATGTGGAGGGCCGCTCAGCGTTCCACCTGGCAGCGACCCGTGGACACCTGGACTGTCTGAACCTCATTCTGGGCCACAATGTTGACATTACTGCTACCGACGCCACAGGTAAAAATGCCTTACACCTGGCTGCGAGGAACGGACAGTCCCTGTGTGTGCAGAAACTGCTGCAGCACAACTGCCCCGTGGGGAATGTGGACCTGCAGGGGAGGACTGCTCTTCATGATGCAGTGATGGCTGGCTGTGCCTCCAGTGTGAAGCTGCTGTGCGACAGTGGAAGCTCTGTCAATGCTAAAGACTTTGATGGTCGAACACCGCTGGTCCTGGCCACCCAAATGTGCCATCCTAAGATCTGCCAGCTATTGCTGGAGCGTGGTGCTGACATCTCCATTCGGGACAAGCAGAACAAGACTGCGCTCATGCTGGGGTGCGAGTACTCTTGCAGGGAGGCAGTGGAAGTGCTGCTGCAGAGTGGCGCCGATGTCACCGCCAAGGATGTCTTCGACCACGACAGCTACCACTATGCCCGGCTCGGCAAGGACCCCCAGCTGGTGGCGGTGGTCAGGGCCGCGCTGGATAATGCCACGAGAGCAAAGGAAGCTGCCAAGGTGGAACACAAGCACATTCAGTCcatggagaagaagaagaacgcCGAAGCTGAGGCCAGTATACGGGACCAGTTTATAGAaGAGCTGCAGGTGGAAAATAACGAGCTGAAGGATAAACTGAGAAAGTTTCATCAGGAGCAGAGGATCCTGCTGGACAGAGTCAGTGGGCTGCAGCAGCAACTCAATCAGGAAAAGAAGACTGTGGAGGAACTACAGAAGGAGTTGGCAGCAAAAGACCAGGAGAAGGACGAGAGTGTCAGGGCCATGGAGACTGTCAAGGTCCAGCTGAAAAGCCACCTGGGCGATTATTCTGGCCAGTCTGTCATTAAAGGAAAAGACAACGTACTGACCAAACAGTCTTATAGCCTGGACTCGGCACAGATTCTGCAGGCAGCCCCGCCGTCGCACTCGGTATCCCGGCCCTTGGAGGTTTCCCGGCCATACCAGGCCTCCGGGGGTGAGACCGAGATGCTACGGCGTATGCAGGAGAAGTTGGAAGAGGAGGTGAGCCGGCTGCAGGCCCAGCTGGTCAGTAAGGAGCAGGAATGCCTGGAGCTGCAGGAGAGCTGCGATGCTGCCCGCCGCGATGCGGACAGGCAGGTGTGCGACATGGAGCAGGCACTGAGCGACGTGCAGAAGAGGATGGTTGACTCGGAGTCCAAGGTCAAGCTGCTGCAGGCCCATGTGGTGGCCGTGAAGGAGCACCTGAACAGCCAGCAGCTAGAGGAGCTGAGGGGCCAGCTGCAGGATGTCAAAGCCAAGTATGAGGGTGCCTCGGCCGAGGTGGGCCGCGTCCGCAACCACCTGAAGCAGAGCGAGAAGGCCCTGGAAGAGTACAAGCAGAGCGAGGGCAGGCTTGCGGAGGAAGTAGATAGGCTTACCAGGGAGCTAAACAAGtcgagggaggagagggaggatgCGGCTGGCCGGCTGATGGAGCTGGAAGGCCTCATGAAGGAGGTGGAGGACAAGTTGGTCACTGCTGTGCCCGCCGAGAAGTTTGACAACATGAAGAACCTGCTAACAAACGCTCTGGACGAGAAGGAGAAGCAGATGGCCGAGCTGAGGGAGGATTATGAGCGGGCCCTGGAGGATGCAGCAGAGCTGCAGAGGGAGCTTGAGGAGCAGAAAGCTGAGGTGGAGAGGCGTGTGCTCAAGGAGGAGCACCAGAGGGTGAGGGCGGTGCTAGAGGAGCAGACAGCCAGTCTCAAGGGGAAGCTGGCCGAGGTCACAGCTAAGAGCCAGGCTCTGATAAAGGAGGTGGAGCAGAGCCAACAGGACAGTGCGCTGCTAAGGGAGCAGCTGAAGGAGCTCAACAGGAAGATGCAGGAGCAGCACGTGCCGCTGAAGACTCACCTGGAGGTTAAGGAGTCGCTGGGCCGTGGCATGGAGGAGCTGAACCAGAAGCTAGCACAAGCCGAGTGGAAGAGCAGCGAGATGGGAGCAGAGTTGCAGAAGCTCCAGGTGGAGAAGGTCAGTCTGTGCGAGAATGTCACTCACCTGCAGGCCCAGTATGTGTCCCCAGAGAGGTTCAAGGAAGAGGTGCACAGTCTGGAGGCTCGCAACGTGGGTCTGAAGCAGGAGCTCCAGGAGCTTCAGAAGAAAAGCCGGGAAACGGAAGAACGGCTGGCAGAGGTGACCTCTGAGAACAGTGCCCTGAGGAAGAGCTTGCAGGAAGAGTATGTGCCGCAGGAAAGGTATGAGGAAAGTAGAATGCAACTGAGTGTGGAGTTGGAGCGTGCCAATGGAGAGTTCTCCAGGTTGGCAGAAAAGTGCAGAGAATCTGAGGAGGAACTAAAGAAAGTGAAAGAAGGAAACGTAAAGTTGGAAGAAAAGCTACAGGATGTTGAAACAAATTTGGAAAAGGAATACATTAGCCTTGAAAAGCACGAAGCAATAAGAAACTCATTGAACAACACTGTTTCTGACTTGGAGTTCAGGGTCAAGGAGGCCACAGAGAAGTATGAGTCCATGAAGGGGGAGACAATAAGGCTACATAAGGAAATTGAAGCGCAGAAGAAGGAATTGGACATGATACAGGCAGCTATTCAGTCCAGGTTTGTTCCACTATCTGTCattgaggaaaaagaaaattctTTCAATGCAAAGCTGAAGGAACTGACTGGGCAGCTGGCAGAGGTGCAGCAGAGGTACAGCCAGGTGAAGGCAGAAGGAGAACAGTACAAGCAAGAGAAGGAGAAGCTGAAGCAACTGGCAGATCTGGAGCAGCAGTACAGAGATGTGACTCTGCAGAGGAAGCAGCTGGAGGAGCAGAACGCGCAGTGCAACATGGAGATGCAGAGCCTGCAGAACCGCATGGATACGGAGTGCGTGCGGATAGAGCAGTTCGAGGCCGTGAAGCAGTCCCTGAGCAGCAGCCTACAGCAGGCCCAGGAGGAGTGCCAGAGGGTCAGGGAGGCCTGCAGGAGCCAGACCGAGAAGGTCAGTGTCCTGGAGAGGGAGCTGCAGAGCCGGAGTGCAGAGACGGTGCTTCTGGCAGAGCATGTCCGCGTCAAAGAGGGCCTGGAGAGGGAGGTGTCCCGTCTGAGGGAGGCGctcagagaggaggaggagaggagtgtAAACAGGGCAGAGGAGGTGGGCTCCCTGCAGATGGAACTGCTGAGCGCCTCCAGAGCCGCGGAGGAGGCCCAGGGCCGGGAGTCGGGGCAGGCCCAGGAGCTGCGGACTGAGAAGCAGAGGCTGGAGGCGGAGGTGCTCATTCTGGGTCAGCGCCTGTCCAACCTAGGGGAGGGGTACGAGGAGCTGACCCGAGAGGCTTCGCGCGCCAGAGAAGGCGAGAGGAGGGCGCAGAGCGAGAGTGAAACGCTGCAGGCCCGGAGCCTCACGGTCCAGTCTGAGATCACAGAGCTGAAGGAGCGCTACGACAAGTCCCTGGCCACCATCGGAGACCTGCAGAGAAGAATCCAGGCGTCCTCCGGGCAGACAGAGGCCAAAGACAAGAAGATCTCGGAGCTGCTGGCTGAAGTGGAGAGGCTGAAGCAGGCCCTGAACAGCCTGGCCATACGATCATACGGTCCCCAGCCCAGCAAGCGTGGTGAAGCCCTGCAGGCCCAGGTCAAGAGCCTACAGCAACAGCTGGCTGGGCACATGGATGAAGATGTGCAGGCTGCTTTGCTGCAGATCATCCGAATGAGGCAGGAGTTTGTGTGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29493 lncRNA upstream 209399 17491445 ~ 17491761 (+) True G23540
TU29491 lncRNA upstream 213760 17487117 ~ 17487400 (+) True G23538
TU29465 lncRNA upstream 221411 17474963 ~ 17479749 (+) True G23515
TU29444 lncRNA upstream 348370 17352572 ~ 17352790 (+) True G23497
TU29383 lncRNA upstream 652842 17047930 ~ 17048318 (+) True G23449
TU29573 lncRNA downstream 91568 17820847 ~ 17821117 (+) True G23610
TU29566 lncRNA downstream 92487 17821766 ~ 17823318 (+) False G23604
TU29567 lncRNA downstream 92487 17821766 ~ 17823337 (+) True G23604
TU29595 lncRNA downstream 175279 17904558 ~ 17904949 (+) True G23628
TU29598 lncRNA downstream 213497 17942776 ~ 17943110 (+) True G23631
AMCG00007403 mRNA upstream 25606 17659682 ~ 17675554 (+) True AMCG00007403
AMCG00007402 mRNA upstream 48348 17651631 ~ 17652812 (+) True AMCG00007402
AMCG00007400 mRNA upstream 117720 17578259 ~ 17583440 (+) True AMCG00007400
AMCG00007395 mRNA upstream 129610 17560978 ~ 17571550 (+) True AMCG00007395
AMCG00007396 mRNA upstream 190198 17492509 ~ 17510962 (+) True AMCG00007396
AMCG00007407 mRNA downstream 324816 18054095 ~ 18058956 (+) True AMCG00007407
AMCG00007408 mRNA downstream 332955 18062234 ~ 18063493 (+) True AMCG00007408
AMCG00007416 mRNA downstream 439171 18168450 ~ 18198526 (+) True AMCG00007416
AMCG00007417 mRNA downstream 469339 18198618 ~ 18201335 (+) False AMCG00007417
AMCG00007415 mRNA downstream 480349 18209628 ~ 18216895 (+) True AMCG00007415
TU28988 other upstream 2413200 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 3211468 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 7088056 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 8201432 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 8989849 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 469489 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 477799 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 560829 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 838490 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 1322063 19051342 ~ 19056133 (+) True G23893

Expression Profile