RNA id: AMCG00007409


Basic Information

Item Value
RNA id AMCG00007409
length 4890
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00007409
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17980242 ~ 17991860 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctgacctgtgcCCTGTCTGCTGTGCTGTTTAGGTTGTCTGTGACCATGCGGTGCCTGGCGGCTCGAGTGAACTACAAGACCCTGATCGTGATCTGCGCGCTCTTCACCCTCATCACAGTGCTACTGTGGAACAAGTGCTCCAGCGACACTGCCCTCCGCTTCCCCCGGGACCCCAGCCTGCTGGACATCAGTTTCCGGGGAGTTGGGTTAGAGAAGCACACAGCAGCTTCCGAGAGCGCCGGCGTCAACCCTCTCCTaacaaagcagcagcagcagtctgaGGAGGCGTCGCCACAGGAGCAGCAGAAGGCACCCCCTGTGGTGGGAGGACTGAACAGCAATGTCAACAAAGTGCTGGGCATCAAGTATGAGGAGATTGACTGCCTGATCAACGATGACAGCACTGTCAAGGGGCGTCGGGAGGGCAGCGAGGTGTACCTGCCCTTCACCTGGGTGGAGAAGTACTTTGAGGTGTACGGCAAGATTGCCCAGTACGATGGCTACGACCGGTTCGAGTTCTCGCACAGTTACTCCAAGGTGTATGCCCAGCGTGAGCCCTACCACCCTGATGGTGTGTTCATGTCCTTCGAGGGCTACAACGTGGAGGTGCGCGACCGCGTCAAATGCATCAGCGGCGTGGAAGGCGTCCCCTTGTCCACACAGTGGGGGCCTCAGGGATATTTCTACCCCATCCAGATCGCCCAGTTTGGCCTGAGTCACTACAGCAAGAACCTGACAGAGCGCCCCCCCCACGTGGAGGTGTACGACACGGCAGAGGAGCGCGACGGCCGTCCAGGGGGCTGGACGGTGCCGCGCGGCTGCTCTCTCACCACCGTCTATGACAAGAGCCGTGCCACCAACGTTCGGCAGTTCAGTGCACCAGaaaCATCGGAGGGGGTGGCCCTGCCCCTGGGCAACATCAAGGACTTCATCCTCTCGTTCGATGTGAAGTTCGTGTCGAATGGCAGCGTGTCCGTGGTGCTGGAGACGACGGAGAAGAGCCCCCCCTTCGTCATCCACTACGTCACCAGCACCCAGCTCATCGCCTTCCACGACCATGACATCACCTATGGCGTGGGCGCCAGGACGAGCTGGAGCACGCTGACCCGCGACCTCCTGACTGACCTGCGCAAAGGCGTGGGCCTGTCCAACACCAAGGCGGTCAAGCCCACCAAGATCCTGCCACGCCGTGTGGTCAAGCTGGTGATGCACGGCCGCGGCTTCCTGGACAACGTGACCGTGTCCACCACCGCCCACATGGCCGCCTTCTTCGCTGCCAGCGAGTGGCTGCTGCGCAACCAGGACGAGAGGGGCGGCTGGCCCATCATGGTGACGCGCAAGCTGGGCGAGGGCTTCCGTGCGCTGGAGCCGGGCTGGTACTCCGCTATGGCGCAGGGGCAAGCCATGTCCACGCTGGTGCGCGCctacctgctgaccaaggaccCGTCCTACCTCAGCGCTGCCCTGCGCGCCACCACCCCTTATAAGCTGCCCTCTGAGCAGCACGGCGTCAAGGCGGTGTTCATGAACAAGTACGACTGGTACGAGGAGTACCCCACCTCACCCAGCTCCTTCGTGCTCAACGGCTTCATCTACTCCTTGATCGGCCTGTACGACCTGGCCGAGACGGCGGGCGATAAGCTGGGCCGGGAGGCAGGGCTGCTGTTCAGCCGGGGCATGGAGTCGCTCAAGGCGCTGCTGCCACTGTACGACACTGGCTCCGGCACCATCTACGACCTGCGCCACTTCATGCTGGGCACAGCGCCCAACCTAGCGCGCTGGGACTACCACACCACCCACATCAACCAGCTGCAGCTGCTGGCCTCCATCGACAGTGCACCCATCTTCAGGGACTTTGTCAAGCGCTGGAAGAGCTACCTGAAGGGTGGCAGGGCCAAGCACAACTAGAGCTGTCCACCAAACAGGGCCCGGAGCCAGCCTGCTGCAGGCCCTCTCACGCTGGACAGTGTGCCCGGATCGGTCCTGGTCTGTCCAGTGGAAACtaaggatgtgtgtgtgcgtgtgtgtgtgcgctggtAGGTAGTATACAGGTGAGGGTGCTTGGGTGAGCTGGTGGTggttgtttgtatgtgtgaggTGTGGGAGTGTGTGGAAAAGGGGTTTTTATGGTTGGTCTTATTTGACTCCAAATATTGAAATCATTAACTTtgtagaaaatatttaaaaaaaaaaaaaaagaatactcCTCTTTGACTGTTTCCAGGGATTGGACACACAGCTGTGTTTTGCACCGAAGTGGGTAGAGACGGGTCTCGTCTGGCCTGACGGCGTTTCCTTCAGTGCTCCACATCTCTGTgtcttttgtcttgttttaagtGCTGCGAAGGTGGGGCTGGGGGGAGGATACACTGTAGACATCACTCACTTTTCAGAAACAAACCATGGGGGAAGATGATGTGCAGGATGATTGCAGatggattattatttaatttttttcccattaaCTCCACCCAAAGAAATTAGGAGTTGACAAGTAAATTCTGTGGGCGCGGATGTCTTGTATGAAGCGGCGACATTAATCTCATGACAGTCCGGTGTTGGGCTTTGTCGGGTCATTTTCTGGCCACACTCGGTATGTATTTGCTTTGGGAGTAAGTAGGGGTCAGTGTCCAGCCTCGGTGACCTCTGCTTCCTTTCGCCCTGCTTCTGTAACTGCACAGTGAACACAACCCTTCCTTTGAGCTTTTCCCTAACTGGCTGTCCTGCACAGAGAACTCTGAATTATTTGACAATCTGGGCTGAACTCTGGCCCGCCACGGTCCAGTATGAATCGGCACCACTGAGTTTccatcttttctctctccctctccctctctgtagcAGCTGTGATCTGCAGGGTCAGTCAGGATGGGTTGTGTGTGGCAGGGTTAAAGCCAAGCATGAACATTTTTACTCTGttactttgtattttacatttttcactccACAGATGTGTTGCTGTGAAGTCACAGATTTGAcattaatcccccccccccccttgcaGAGCACATGTGTGTGACCCACCTCCACCCATAGATACCTGTGCACAGCTCCTTGCTCTCCCCTGGCTGGGGTGCCACTTTCCTATGactatatataaatcaaaacgggtctttaaaactgtgtttttttgttttttttttatcatccaGTTATGCTTtagaattattaaaaacagaaaagggaaaacattataaataaaatattctttcAAGAAATGACAGCGTTAGTGTAGGTTTCCAAATCCACTTCCTGTGCTCATGGCAATTCCCGTGTTTCGGTCGTTTGAATGTCTTGCAGTCGAGGATGAGGTGTTAGGGAATCTGTTTGCTGTCATTAGGCTGGCTGGTCTGAGGGGTGTGTCGGGCTTCGGTGCTGCACACTAACGGGTGTGTTAGAGGAGGAGTCCTGTGTGTGGAGTGATGCGCAAGTCTCTGTGCCAGTACTGCTGAGGGgggtgggaggaggaggggagggagggagagaaccTAGTCAGGGCTGGGGAACACCCTGATTTACTGCCCGGCAAAAGGAGGCACACATTACAGGAGgataaaagaacaacaatttGCATTCCcaaagtgaaatatttatttataccttATGTATGCACAGAGCCAGGCACTGGCCTCCACACACGGGCAAGTCTACAGAGTCCATGTGAAGTCGTCCCGGAGTTCACACGCCCGACAGCCCTGAAAGCTGACAAGCACAGGCATTACGTTGACATTGTGACATGACACTTGTCTTCtatagatgtatttaaatgcGGAAGAAAAGCCCCTATTGTGAGAATCGTTCAGCAGGGTTGTGAGGGAGGCGGCCCGGGCGTTGGCCCTGCTGGTGCCGGGTGTGGCTGGTGGGAGACGACTGTAGGAATGTGGTGTCGATTCTCTGCTTGTTGTGCTGTGAACACAGCTTTGCGCACTACACTACAGGTTGTATGTATTACTGTATTCGACTTAGGCAGCAGTAGGATACTGTGGTTTAGAATCGGTTCTTTATGACGGCATGTAAagttttcctgttgtttgtaCCACAGTCTCTGAAACCGGGGTTTCTTTCCATCAGAGATGGAGACATCAAGACGTCTCTGTGTGTGCGGTGAGGATGTCAGTTCAGTCCTGTTGTGATGGACATTTTACATAAATcgaaaaatattaaaagtgtgCCCCTCCAACCctccagtttaaaaaacaaaccgaaaaacaaatgatcacttcaacaacaataaaaactgcCTTTCTGTCCTAGTGTAGATGGCTTTAATGGGGATTTAGTGAAGGAGAAATGTTATGTAATTTGCGGCAATCTTCTCACCGGGGATGTGTGCAACTGTACAATGAATTGAGTGTTTTGCTGGCGCTGTCAAAGGGAGCAGGCTTGACAGCGACGTGTTATTTTCGGGGACTGTGTTTACttaatgttttgcattgttttaaagatgaaaagCGTTGGCGGAGATCATGCTGTCTGCGGCTGAGAACAGGCCGACGGCAAAAAAAGCACAATGGGACACTTCCtgattagttttcttttttcttttagttttagtttttctggaCAATGTGCAAGACCATTCCCTGAAAGCTGCTACTCGTGTTTCACAGTGTAATTGATAAATGTACAAtccttcttttttcttctgtttctcctTCAGTATCCTGTACATTTGACATGTGGAGATAGTCACATGTGACATATGCAATAAACTGTTTACTGTAACCTGTTGCTAGGGGATGTCCTGGGAAGTTTTACAGACTTTGCAATTCAAGCACAATGTGCACACGCTACCATTTTTTTATGCagagtgtttatatataaaagaatcGATCTTTGTGCTTCaaaatttgctttttaaagttgtaaaataaaaggcatttttCTTA

Function

GO:

id name namespace
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives molecular_function

KEGG:

id description
K01793 GLCE; heparosan-N-sulfate-glucuronate 5-epimerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29596 lncRNA downstream 73834 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 156924 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 205396 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 321684 17658352 ~ 17658558 (-) True G23580
TU29524 lncRNA downstream 396802 17581606 ~ 17583440 (-) True G23566
TU29651 lncRNA upstream 80195 18072055 ~ 18074005 (-) True G23676
TU29680 lncRNA upstream 210599 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 322291 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 627425 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 720217 18712077 ~ 18714368 (-) True G23813
AMCG00007411 mRNA downstream 1720 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007406 mRNA downstream 22180 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 131518 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007401 mRNA downstream 331470 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007399 mRNA downstream 449643 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007412 mRNA upstream 46975 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007410 mRNA upstream 73566 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007413 mRNA upstream 121915 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 211141 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007419 mRNA upstream 232471 18224331 ~ 18237308 (-) True AMCG00007419
TU29265 other downstream 1358337 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1657591 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1657591 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4034177 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4628169 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 63610 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 784500 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1923286 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2339653 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2479251 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066243 True 1825 mRNA 0.52 3 NC_007118.7 33424044 ~ 33441245 (+)
grasscarp (Ctenopharyngodon idella) CI01000184_00340384_00342554.mRNA True 2022 mRNA 0.50 3 CI01000184 340384 ~ 342827 (+)