RNA id: AMCG00007410


Basic Information

Item Value
RNA id AMCG00007410
length 3648
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00007410
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18065426 ~ 18077532 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCATGGCGTCCACAGTACCGAAGCTCCAAGTTTCGAAACGTGTATGGCAAGGTGGCCAACCGAGAGCACTGCTTTGACGGCATCCCCATCACCAAGAACGTCCACGACAACCACTTTTGCGCCGTCAACGCCAAGTTCTTGGCCATTGTGACCGAGAGTGCTGGCGGGGGGGCGTTCCTCATCATCCCCCTGGAGCAGacaggCCGCATTGACCCACACTACCCCAAGgtgcgGATCTGGGAGATCCCTGATGGGGGGCTGAAGAGGCACATGACGGAAGCGGTGCTGGAGCTGTACGGACACAGCCGGCGCGTCGGCTTGATCGAGTGGCACCCCACCAGCAGTGGCATCCTCTTCAGCGCTGGCTACGACTACAAAaTCCTAATCTGGAACATGGACATCGCTGAGCCAGTGAAGATGATCGACTGTCACTCAGATGTGATCCTGTGCATGTCCTTCAACACGGACGGCAGCCTGCTGGCCACCAGCTGCAAGGACAAGAGGCTGCGCGTGATCGAGCCGCGCTCTGGCCGGGTGCTGCAGGAGGCAAACTGCAAGAACCACAAGGTGAACCGTGTAGTATTCCTGGGCAACATAAAGAGGCTGCTGACCACGGGGGTGTCGCGCTGGAACACACGACAGATCGCACTGTGGGACCAGgagGACCTGTCGATGCCAATCATTGAGGAGGAGATCGACGGGCTGTCAGGGCTGCTCTTCCCCTTCTACGacgctgacacacacatgctctATCTGGCTGGGAAGGGAGACGGCAACATCCGCTACTATGAGGTCAGCACAAAGACGCCCTACCTGCAGTACCTCATGGAGTTCAGGTCCCCCGCCCCACAGAAAGGCCTGGGCGTGATGCCGAAGCACGGACTAGACGTGGCCTCCTGTGAGGTGTTCCGCTTCTACAAGCTGGTGACGCTGAAGGGGCTGATTGAGCCCATCTCCATGATCGTGCCCAGGAGGTCAGAGACATACCAGGAGGACATCTACCCCATGACCCCGGGGATGGAGCCCGCCCTCACTGCTGAGGAGTGGCTGAGCGGCATCAATCGCGACCCTGTGCTGATATCCCTGAAGGAGGGGTACAGGCGCCCCTCACGGCTGGTGTTCAAGGCACCGGTGAAGGAGAAGAAGAGCGTTGTGGTGAATGGCATCGACTTGCTGGAGAATGTGCCGCCCAGGACAGAGAATGAgCTCCTGCGGATGTTTTTCCGGCAGCAGGACGAGCTGCGGCGGCTGAAGGAGGAGCTGGCGCAGAAGGACGTGCGCATCCGacagctggagctggagctcaACAACCTGCGCAACAGCCCCCCGGCATGTGACCCCCCCCAGCGACACGAACTCTGAAAGACACTCCGCCTCCCACTGCAGCTcccatcccccccaccaccactaccaccaccactaccaccaccactccCTGCCTCCCCTGCCCTGCCCCCACCCCACATACTGCCATAGGACTTGCGCAGGACAGATTGGGCATTCGCTGTTCCATGCTCTGCAACTCCTCCTCCCACTCCTCTCACCAGTGACCTCGGCTCCGACCACTTGCAGCTGCCATTTCTCAGCAAGCATCCACTGGAATGGCgcaatatgaaatacaaactgATCGCTGGTTGATTGATTAGGTCAAAGGAAGAAAAGGGACAGCCATTCCCAGGAAGCTGCCCACATccagtgtcagtcagtgagcTGTGAGTGActctggctctggctcctgGGCTCCCCTGAAGGACCTCGACCTGCAGGCTGCTTCATGCATCTGTGGTCcgtgaaaatgttttaatttccatttttcttATGCTTATTActcttatttattcttttgtttgtttgtctttttatatagGGGTTCATTAAACCGGCTCCATTTAGACAAGGCTAACCCCATACCCCAacacccacccctccccccacacccAAGCCCTTACTAGCGGGACCCAAATACCAATGAGGAGATTCTGCCCAGTGAGGAAACTCATCCCCATGCATTTCCTTAGATTTGGTACAGGATCAGCATAGGCCTTAACTGAGTGCAGGCATCCTGGGGCCACAGAGCTGTGTTGGAGCCACGCTGGGGAACTTCAGGGTTTCTGCCCCACAGTAGGAGTGGGGCAACATCACAGTAATCTTTAGGAAACACGGAGAAGATAACGCAGTGCAAGGTCTTGGTTAGTCAGACAATTTCCTCTTGTTTTGCTGCAGACCTGTTGAGAGTAAGGGGCACTCTAAACCTGAGCTCAGATACAGCAGGGTACTGTGAACCAGTTCTGGAGTACAGGCCAGCCCAGGGCAACTGACTGGTCTGGGATGACCAGTGCACACTTTCACAGTCTGGTTTCAACTCCAGAAATTTTACCTGGAGGGGTCCCAAGCCCTAGGTACCAGACATTAAGCTCCAACAGTGCAAATAAATCACAGGTCACAgttcacagtacagtacagtactttaAACACAGAAGGGGGGTTGCAACACCCAGGTACAATGAAGAGCACGagtagggggggggggcacagacCAGGAGAATGAGATatggagggaaagaaaaaagaaaaaagcagaagaGCATTAAATTCAGCGCCCCAGACCTGCGGCTATGGTTTAATCTTTAAATCTGAGACCCTGCTAATGACAAGGATGACAAAAAGGGCTGAGAACCACTAGTCAGGTGTGAGGGGAGGCTGGCATGTCAGAAGGTGGCAGGTAGAGACGGGTCTGAGGAAACCACGAGGGAGACGGGGGTGGACTACAGTAGCTGGGGGTTTGTGATTGAGGTTGCAGGGTTGTGCAGGGTGGGTGGCTCTGTGCTCGGCCGCGTTGAGTAGCCAGGTGCCACTGGGTACAGGGAGATCACTGTGGAATAGCAGGGGTGAACTGTCACAGCATTGCCAGCACAGAGCACTGAATACAAGGGCGACAGCAggttaaaactaaaaaacagcaaccaccccttagacacacacacactgaaaggAATTAAAAGATCCCTCTctataaaattaatacataatcaTGTTATAATGTCTGTGGCTTGGAGAGGACAGGCTATGAGACACACAGATGGTGCAATAGGACGGTCtggttgtgtatggggctgtgtTAGCATTAGAGCCTACCACTAGAGGGCGCGGCGCCTTaataaaactggaaacatttgCGCTAACTACACTGACTGAAACTGGAAAAGACAAGGAGGAAGTGGATGCGGTGTGCAGCGCTGGAACTGTGGCTCACAGCATCCCACCTGTCTCATGTAACTTAACAATATTAAAAGGGTTTCttaataaactgtgtaaaagaTATCGTCTGaaaatcaaaagctttttcaaCTGTAACCTCAACCGTCTCTGCTGCTTTGCTAACGTTGCTTCTGTTTTGACTCCATGAAGAAATTGAAACGAACAGTGAGCCCCGCAGCATCACACGCACTAAGATGCGCACTTTGAAAAGTGCACAGACTCAAAGGTGCAGACAGACTGATTCTGGCATGTGATAGTTCGAAGCATTAATGTCATTGGAGAAATTGTtcttggtaaaaaaataaataaagagtcaAGCACTTCGACTTATTGCAAATGGCGAGAAGTGGCGCACTGGCTAAGTCCAGTGCTGAAGTACTAACTACA

Function

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0016020 membrane cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K13887 CORO2; coronin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29637 lncRNA downstream 2434 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 159018 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 242108 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 290580 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 406868 17658352 ~ 17658558 (-) True G23580
TU29680 lncRNA upstream 124927 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 236619 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 541753 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 634545 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 700313 18777845 ~ 18778069 (-) True G23839
AMCG00007412 mRNA downstream 17208 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 73566 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 86904 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007406 mRNA downstream 107364 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 216702 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007413 mRNA upstream 36243 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 125469 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007419 mRNA upstream 146799 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 187882 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007422 mRNA upstream 212560 18290092 ~ 18294570 (-) True AMCG00007422
TU29633 other downstream 6477 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1443521 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1742775 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1742775 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4119361 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 698828 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1837614 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2253981 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2393579 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5894139 23971671 ~ 23972665 (-) True G25026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066240 True 3391 mRNA 0.44 12 NC_007118.7 33314925 ~ 33341921 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_07070470_07091280.mRNA True 1684 mRNA 0.48 12 CI01000026 7070470 ~ 7091509 (+)