RNA id: AMCG00007411


Basic Information

Item Value
RNA id AMCG00007411
length 2169
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00007411
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17962721 ~ 17978522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCTGCAGTTCCCAGCGCTGCCTGCAGAGCTGCAGGATCAGAGACAGTTGGCCTATGGCTGGCAGGAGCTCTGTGCCCTGATCCCTGGCTGCTCATCCCTGTGCTCTCGGGGGACGGCTGAGGCCGGCAGAATGCCAACAGTGGACTGTGGGCCGCCAGCGACTCTCATTGTCAACTGCATCCGAGGCGGCGTGTGCAGAGTGCGGGCGGCCGCTCTGGGCGGGACGCATCCCCAGGACAGGGAGGCGAATAAAACGCACCGTGCCGCCGGGGAGACGGCCACTGCAGCGGGACACACCGGCACCGGCACCGGGAGAGCACTGCTGCAGCCCGAGCCGCTGCCACGCCGCATCCGCGCACAGCTGCCCTTAGTTCCTGGTGGAGAGGGACtgggagcaggagagagggagcataggAGCCCACTGCAGGAGAAGAGACGTGCGAGGGGCTGCCTGTGGACTGACTGGCAAGTGGAGAGGGGCTGCCTGCGGGCTGACTGGCAGTGTGGGCAGTGCTGGGGTGTGAAGGGACGGGTAAAGGAGCTGTGCCGGATGACGCTGGAAGCCGAGAGCAGAGAGCAGGGCGGGACCCGCAGGAATCCTCCCAGGATTaaccctgtctccctctctgctcctctgtctctctgcctgtctctcaccctctcctctcctctctcgctCCTGTCCACCATGCTGAGTGTGAAGCTTCCTCGTGTCTTCAGCATCAACCAGGTGCCCAAAGTGTTCCATGAGGATGGCATCATCTCGGGTTACCGGCACCCCTGCAGCTCTGCCACAGACTGCCTGCTCAGTGTCTTCCAGCTGACCAATGAAACGCTCAACATCTGGACCCACTTCTTGCCCACCTGGTATTTCCTGTGGAAGCTGCTGGGCGTGCTGTACATGCAGGATGTGTGGGCCGACTGCTACTCCTGGCCCCTGCTGGTGTTCCTGCTGTCCTGCTGCATGTACCCACTGGCCTCCAGCTGCGCCCATACCTTCAGCACCATGTCCGTCCGGGCACGCCACGTCTGCTTCTTCTTCGACTATGGTGCTCTGAGTTTGTACAGCCTAGGTTCAGCCATCACCTATTCAGCCTATGTCATCCCAGACCGATGGGTGAACAGCAGCTTCCACCACTACTATGTGCCAGTGGCTGTGCTTAACACTGTCATCTGCACCGCCCTGGCCTGCTACTCCCGGTTTCCAGAGGGTAAGAGGCCAAGGCTGGCGAAGATCTTCGTGTGCGCGGGAGTCGGCTGCACAGACAATGCGAGCAACATGCTACACTACCAACATGTTTCCCTCGCCTTCCTCACCTGCTTCCTGTTTGCCATGCACCTCCCAGAGCGCCTGGCCCCTGGCTGCTTTGACTACATCGGTCACAGCCACCAGCTGTTCCATGTGTGCGCGATCTTCAGCACGAACGTCCAAATGGAGTCCATCATCCTGGACATGGAACTGCGCCGGGAGTGGCTGCTGGCACACGGCCCCCCCGTGACCTTCGGCAGCTCTGTGGGGCCGGCGCTGCTCTGTGTGGCTCTCAGCCTCTGCATCATCTATGCCTTCAGCCAGGCACTATACTGGGTGCCCACCACCACTGCTGTCAACAAGAGGCACAAGCGCAGCTGGAGGCCCCGGTCAGCATCAAGGGCTTCCACCAAATAACTGCAGTCTGGGAATGGCTCCTCCTCTGCCGCTCCGGCTGAAAACTGCAGTCTGTGTTCGGCCTCGTGGGAGGGGGCTCCTACTCTgaagctgtgtctgtgtgtctccagTGGTCTGTGCGTttctgtgtctgagtgtgtctttgtgtctgtgtgtctgtgtttctgtgtgtgtctgaatgtgtctgttgtgtgtctgtgcatatCTACgcatttctgtgcttttgctCTACGTGGGACACCCTATCACAGGGAATGAAAGGAAGGGATTGGCTCACTGACATTGCCCCAGAGAGCCGCTGCTCTGTGGGCCAGCGCCAGGCAGCGTAGTGCTCCCTCGACCTGGCATTGTGTTTGGATGCtccttttaattgtattgtcaCACTCATGAGCTGGGATGCTTGAAGGGAGGGGCTGACCTTTCTCAGTCTCAGTCCGGTGAATGTTATTTGCACACCTTCTGTGATATTTTGCACGTTTTGTGGGACTGGAAGGGAAGCAT

Function

GO: NA

KEGG:

id description
K25041 PAQR5, MPRG; membrane progestin receptor gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29596 lncRNA downstream 56313 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 139403 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 187875 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 304163 17658352 ~ 17658558 (-) True G23580
TU29524 lncRNA downstream 379281 17581606 ~ 17583440 (-) True G23566
TU29651 lncRNA upstream 93533 18072055 ~ 18074005 (-) True G23676
TU29680 lncRNA upstream 223937 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 335629 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 640763 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 733555 18712077 ~ 18714368 (-) True G23813
AMCG00007406 mRNA downstream 4659 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 113997 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007401 mRNA downstream 313949 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007399 mRNA downstream 432122 17521789 ~ 17530599 (-) True AMCG00007399
AMCG00007392 mRNA downstream 591465 17353112 ~ 17371256 (-) True AMCG00007392
AMCG00007409 mRNA upstream 1720 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007412 mRNA upstream 60313 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007410 mRNA upstream 86904 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007413 mRNA upstream 135253 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 224479 18203001 ~ 18208020 (-) True AMCG00007418
TU29265 other downstream 1340816 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1640070 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1640070 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4016656 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4610648 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 76948 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 797838 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1936624 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2352991 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2492589 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile