RNA id: AMCG00007412


Basic Information

Item Value
RNA id AMCG00007412
length 2769
RNA type mRNA
GC content 0.59
exon number 19
gene id AMCG00007412
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18038835 ~ 18048218 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCCCAGGCAGACAGCAGCTCCACACACTCAGCAAACTGCACCCATATACGGACCCACCTGCACTACTGCCACAGAGCCCCGCCACAGACACAGCCTCAGCAGGAGCGAGGGGCCCTCCCCAACCGGCCGCACCCTCTCAGGTGGTCCTGATGGCTCGGCTATTGAGAACAGAACCCTGTGCCCAGGAATCATCACCCGACGGCCCAGCAGGGTCACCTCCCAGGATAACTAACCCACCTTGTGAGGAGGTTTTGGAGAGCCCGGACTGTCCTGTTGACTGGAGGGGCACCAGTACTGACCTGCCTCCCTTCCCCCCCCGCAGCACGATGAGTGTGGACGAGGACGCGCGCTGGCTGGAGTGGGTGACGCAGCAGTTCGAGAGCATCGCCGGGGAGGACAAGGAGATCGACCTGGACGAGTTCAAGACGGCCCTCAAGGTGAAAGAGTCCTTCTTTGCAGAACGTTTTTTCGCGCTGTTCGATTCAGACGGCAGTGGCTCCATCAGCCTGGACGAGCTTCTGAAGGCCCTGAACCTGCTGATCCACGGCAGTGAGACGGACAAGCTGCACTTCCTGTTCCAAGTGTACGATGTGGATGGCAGCGGCTCCATCGACCCCGACGAGCTGCGCACCGTGCTGAAGTCCTGCCTGCGGGAGAGCGCCATCTCTCTGCCTGAGGAGAAGCTGGACGACCTGACGCTGGTGCTGTTTGAGTCGGCCGATCGGGACGGCAGCGGCTCCATCACCTTCGAGGAGCTGAAGGCCGAGCTGGAGAACTTCCCCGAGGTCATGGAGAATCTAACCATAAGtgcTGCCAACTGGCTGAAGCCCCCTGAACCGGAGCACAAGTCCCACACCCCGCGCTACCTGACCCCGGCCTACTGGCACAACAACAGCCGGAAGCTGCTATTCCTGGGCTGCTACATCTGCCTCAACACCCTGCTGTTCACTTTCGCCGCGCTGAAGAACAAGCCCAGTGGCCCCTGGGTGATGGTGGCCAGGGGCTGCGGACAGTGTCTGAACTTCAACTGCACCTTCGTTATGGTGCTGATGCTGCGGCGCTGCCTAACCTGGCTCAGGGCCACCTGGGTGGTGAGGATCCTCCCACTGGATCAAAACGTGCTGCTGCACCAGCTGGTGGGCTACACAATCTTTGGGTTCACCCTGGGGCACACGGTCGCTCACATCATAAACTTTGGTAAGAAAAACCATCATGAGACTGGTGCAGCACACGAGACTGGTGCAGCACACGAGACTAGTGCAACACACGAGACTGGTGCAGCACACAAGACTGGTGCAACACGCGAGACTGTGGTGCTGTCTCAGCGCGGGGACTATAGGCTGTGGGAGTACGTGCTGACCACACGGCCAGGGATCGGCTGGGTCTGTGGTACGGCCTCTCTGACTGGCGTCTTGCTGCAGCTGCTCGTTAGCCTGATGACCGTGTGCTCCAGCACCTTCGTCCGACGCAGCGGCCACTTTGAGGTGTTCTACTGGACTCACCTGTCCTACATCGGGGTGTGGGGTCTGCTGGTTGTGCACTGTGCCAACTTCTGGAAGTGGTTTGTGGTGCCTGGGCTGGTGTTCCTACTGGAGAAACTGGTGGGCATCGCAGTGGCTCGCATGGGCGGGCTGTACATCGTGGAGGTCAACCTGCTGCCCTCCAAGGTGACCCACCTGGTGATTAAGAGGCCGCAGTTCTTCCACTTCAAACCAGGTGACTATGTGTTCATCAATATCCCCGTCATCGCCAAGTACGAGTGGCATCCCTTCACCATCAGCAGCCCTCCGGAGCAGCAAGATACGCTGTGGCTGCACATCCGGTCGATGGGCCAGTGGACCAACAGGCTGTACGAGTACTTCAGGCAGGCTGGGCCCCAGAGCGTCTCCGGCCACAGCCTGGCCAAGAGCCTGACCCGCCGGCGGCGCCAAAGGATCAGACAGGGGGAGCTGTTCCACTCTGCCGGCTGCAACGGGACAGTCGCCTCGAACAAGGATGCCGCCATCGAGCTGACCTCCTACCGGCCCAGTTCCCCCCCCAGCCCACCCGCCGAGCTGGGGGGACAGGCTGAGCGTGGGGACAGCCCACTGCCCTGTGAGATCACAGGAAAACTGAGTGAAAATCAAAGGTTTTGTAACATTAAGTTTCTCTCTGGTGCCGCCTATattgtcagtgctgtgtgtgagtgttgtttcagtggcagtgctTGCTATGTAGATGGACCGTATGGAACGCCAACGAGGCAAATCTTCGCCTCAGAGCACGCAGTCCTGATTGGTGCCGGCATTGGCATCACGCCCTTCGCCTCCATCCTACAGAGCATCATGTACCGGTATCGGATGAGGAAGCAGAACTGCCCTAACTGCAGCTACTCCTGGTGTGAGAACATCAAGGACAACGAGATGAAGCTCAGAAAGCAGCAGACAGCAGTGTGTACCGGGCTGCACAGGCTGGCACTGACCCCTCCTCTGTGTGGCCGCGTGTCTCTCACTGCAGGTGGATTTCATCTGGATCAACAGGGACCAGAAGTCCTTCGAGTGATGGCGCTGGACCTGCTGGccaagaaggagaagaaggactCCATCACTGGGCTGAGGACACGCACGCAACCTGGCCGGCCCGACTGGGCCAAGGTGTTCCAGAAAGTGGCcgaggagaggaaggggaaggTGCATGTGTTCTTCTGTGGCTCCCCGGCGCTGGCCAAGTTAATCAAGGGCCACTGTGAGCAGTCCGGCTTCAAATTCTACAAAGAAAATTACTGA

Function

GO: NA

KEGG:

id description
K21424 NOX5; NADPH oxidase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29596 lncRNA downstream 132427 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 215517 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 263989 17774551 ~ 17774846 (-) True G23620
TU29539 lncRNA downstream 380277 17658352 ~ 17658558 (-) True G23580
TU29524 lncRNA downstream 455395 17581606 ~ 17583440 (-) True G23566
TU29651 lncRNA upstream 23837 18072055 ~ 18074005 (-) True G23676
TU29680 lncRNA upstream 154241 18202459 ~ 18203906 (-) False AMCG00007418
TU29732 lncRNA upstream 265933 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 571067 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 663859 18712077 ~ 18714368 (-) True G23813
AMCG00007409 mRNA downstream 46975 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 60313 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007406 mRNA downstream 80773 17943771 ~ 17958062 (-) True AMCG00007406
AMCG00007405 mRNA downstream 190111 17823894 ~ 17848724 (-) True AMCG00007405
AMCG00007401 mRNA downstream 390063 17592301 ~ 17648772 (-) True AMCG00007401
AMCG00007410 mRNA upstream 17208 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007413 mRNA upstream 65557 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007418 mRNA upstream 154783 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007419 mRNA upstream 176113 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 217196 18265414 ~ 18275251 (-) True AMCG00007420
TU29265 other downstream 1416930 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1716184 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1716184 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4092770 13945643 ~ 13946065 (-) True G22931
TU28633 other downstream 4686762 13351517 ~ 13352073 (-) True G22838
TU29633 other upstream 7252 18055470 ~ 18058949 (-) True G23661
TU29846 other upstream 728142 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1866928 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2283295 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2422893 20471111 ~ 20472704 (-) True AMCG00007500

Expression Profile