RNA id: TU29687


Basic Information

Item Value
RNA id TU29687
length 2731
lncRNA type sense_over
GC content 0.48
exon number 2
gene id AMCG00007414
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18217730 ~ 18224936 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGCTCTCCTGCTCCCCAGCCCCGGCCCACTAAGTCAGAGACAGACTGTGTTAGCGAGTAATTCCTGCTGTCTGCTGGGGGCAGGCATCTGTGGAAAGAGTGCAGTGCATCAGAAAGCCAGCACCCTGGACCACAGGCTTGCGCACTAAAATGTCCTGCCCAGACTTAAGTCAGcacatgaaaaaggaaaagggcAGCAGGCAGGGTACAAGTTTTAAACCAACAAATCACAACTTTTCGACCAACAGTTACGTAACGTGCAGCCAATCAGAAGACATCGAGACAGCAGGTACTGGGTAAGCCAATCGTAAAGCAACACACTAGAGGTAGGGCATTCTGAGATACAACGACTCCGGGGTGGGGCCTGAGCACCCACCCCCTCAGACACACCGCGGTGAGAATGTACACCATCGCGCAATCTTCAAACCACCCCCCCACGCCAAACACATTCTTGCACATTCTGACAGCCAGGagcaccccccacctccccgaacaatgaaaataaaaagaagcatTTGCTCCAGGAGAACAGTCCAGAAGAACACACACGCTCAGTGTCACATGGTGGAGCGGGTTCAGGAGAGTCCCAGCAGGACAACACGGCACAGACACCGGCCAGCGAGAGCCCCAGCACACAGGGAGCCCTGCCCACCTGCCCAAGAGCAGCCGGGACTGCCGCCTCCTCCTTCGCAGGGCTGCCTCTGAGGGACCTCTGCCATTAACCACAAACCTCTTTGCTTGCTGGTCGAAATTAGCCCCGTTATCTCGTGTGACAAGGAACTAGAAATTCCCGGGCACTGAATAAAGTGAACGGGTGACCCCAGAGGCTGCCCTCCTGCTGCAACACATCCCTCACATTGCGAAAACAGTAACTTCCCAAAACAcggggggaaagaaaagagaaacgaGAACAGCAACAATAGTAATAGAAATAACGAACGGGGTGAGTTCTAGCTGCTCATAGTGGTTCTGTTCCCTTTGGATGGAGTGAATGTCAGTGAGAGGCAGAGAACCATGGGACACCCAAGTCCAGTATTAGTCTGTccaaaagtattattattgataataaaaataatacaaaacacatctgtattGGAGAATTCAGGTCCAGAAACAGAATATCCATCAGTGGCAGATGACTGGAGCAGCTCACCAGCCCCAGGGAACCACACAGGCCGCTcagccccagcagcagcagggcgcTCTCACAGAGCCGGGTCTCTTCCAAGCACAGCTCTCCACCCTCGGCTCCAGGAGGCGAGCCTAGGTTTCCCCAGAATCCCTCCCCAGGCAGCACACCCCTTCAGACAGCATCCAATGAAAAACTAATTAAGATATTAACTGCCTTTGCAAATCACAGCCGTGCAAAAAATctcacaagtttttttttttttttttttttcctcttctatatataaatatatatattttgaaaactgcaTGTCAGCTCAAGGCTGGCTGTCACTACAGCCGGTCCCACGAGAGCCAGGTCACAGGGCTGAGGCCGGCCTGCAGGACAccagtttctattttttttttttggcattgtgcaaatggaaacaaagtggttgaaaatgcaaaaatgctacatttataaaaacagcTTAGTAAATcctgaaatgcttttttcttctttttctttttttaaacaaaaaaataatagtcTTTGTTTACATTACTTCAAATCAAAAGGATTCAAGAATACAGATTGCTCGTTTAAAATCATCGAAAAGGGGACAAAGAGCCGAGACAGTTCGTTTGGAAACTGAAGGACCAGACTGGCTGTACAAAGGGAAACCAGAAATGGCGAACTTTATCAATGCGCGCACGCCCCCCCGCTACATCCTGAAAAGGCAAAGGGAATGCTTTTAAACAGgtcatatattttacataacttAACAGGATCATAAAATTATTtgcacaaaaagaaagaaagagtaaAACACAATCTGTCAACCACTGAGACGCCAGGCTCTTTCCCCACCGAGAGACTCTGCTACAGCGATTCTAAAACGGGAGACTGGAGACGATCGAACCAAACTTGATCACGGTGAAGAAAATAATGCCATTGAtgtggaacaaaataaaaataaaaatacaaaaaggtgtaataacaacaacaataataataataataataataataataataataatagggacAACAAATGTATAACTGTGAAAAAATCTTCAGTATCCACAAAAAATATCAACTGAAGTTACTCACTGGACAGGCAACGTCCTAAGTTTATATacaaaagtaaaactgaaaatatatttttttgttctctgtaCACAGCATCGTTCAttgtatcttaaaaaaaaaagacctacttttttttttcctttgtttatttttttctttttaagtgtgtttgtttctgtctaCATTAGTAGAGGAGATCAGACCGCGCCGCACTCCGGCAGTCAGTCCAGTGAGATGACGTCGGGGATGGAGCCGTAGATGGCGGCGGCCGCTTCCGCCGTGGCCCTGGTGGGGCCCGGGTGGGCGTGGCTCTCCCGCAGGCTGCTGGACGACaccaggctgctgctgctgctgctgctgctcccccCGTTGCCCGGCGCCAGCGTGCTGCTCACCGGGGTCCCCGGCTGCTCCAGGTACAGCTGGGAGGGGCTGTACGGCAGGAAGCGGTTGAGCGACGGGTGCAGCATGTCGTGCTCTTCCGAGGCGGatgccgccgccgccgctgccACCAGCAGGTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29673 lncRNA upstream 17822 18202462 ~ 18204361 (+) True G23696
TU29613 lncRNA upstream 159279 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 268908 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 279073 17942776 ~ 17943110 (+) True G23631
TU29595 lncRNA upstream 317234 17904558 ~ 17904949 (+) True G23628
TU29781 lncRNA downstream 361238 18586174 ~ 18586536 (+) True G23780
TU29782 lncRNA downstream 363080 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 363930 18588866 ~ 18589068 (+) True G23782
TU29795 lncRNA downstream 398985 18623921 ~ 18625059 (+) True G23791
TU29811 lncRNA downstream 489735 18714671 ~ 18719794 (+) True G23804
AMCG00007415 mRNA upstream 5288 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007417 mRNA upstream 20848 18198618 ~ 18201335 (+) False AMCG00007417
AMCG00007416 mRNA upstream 23657 18168450 ~ 18198526 (+) True AMCG00007416
AMCG00007408 mRNA upstream 158690 18062234 ~ 18063493 (+) True AMCG00007408
AMCG00007407 mRNA upstream 163227 18054095 ~ 18058956 (+) True AMCG00007407
AMCG00007428 mRNA downstream 172411 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007433 mRNA downstream 342306 18567242 ~ 18570472 (+) True AMCG00007433
AMCG00007437 mRNA downstream 350906 18575842 ~ 18584276 (+) True AMCG00007437
AMCG00007438 mRNA downstream 365744 18590680 ~ 18596353 (+) True AMCG00007438
AMCG00007436 mRNA downstream 394372 18619308 ~ 18621844 (+) True AMCG00007436
TU29676 other upstream 13875 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 20223 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 2934223 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 3732491 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 7609079 10611196 ~ 10613104 (+) True AMCG00007307
TU29705 other downstream 65172 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 342833 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 826406 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2835465 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 4056764 22281700 ~ 22282958 (+) True G24606

Expression Profile