RNA id: AMCG00007415


Basic Information

Item Value
RNA id AMCG00007415
length 1943
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00007415
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18209628 ~ 18216895 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTtagataaatacatGACGGAGAAGGCGCGGATTTGCAAACCGCAAAGCGTCCTGCAGCGACTTGAGTTGGGAGCCCAGCCTTTGACAGCGGCGGgtcgggaggaggaggaggaggaggaagaggaagagcaggaggcAGGAAGTGAAGTGAGAGGGAGGCTGGAGCGGCTCTTCATCGAGAGTCTGCGCAGGGAGGGAGATGCAGCCAAGCACACGGAAGCGGCACAACTCTGCCATCCCAACAGGCATGCGTCCCGGGAGTCTGACTCTGTGCTCAAGAGGCCACAGTTCCACCTGGACCTGTGGTTCTACTTCACTGTGCAGAATTGGGTCCTGGACTTCGGCCGGCCCATCGTCATGATCATCTTGCCTCTGGAGTGGTTTCCTCTGAACAGGCCCAGTGCTGGAGACTACTTCCACATGGCCTACAACATCATCACCCCCTTCCTGCTCCTCAAGCTGATAGAGCGCAGCCCAAAGACACTGCCGCGCTCGGCCGTGTACGTCTGCATCATCACCTTCGTCATGGGTGCCAGCATCCACCTGGTGGGCGACTCCGTCAACCACCGGCTCATCCTGAGTGGCTACCAGCTGCACCTGTCCATCGACTCGTTTGAGCTGCTGTACTACTACGATGAGAACCTGGGCCACTCGATGTGGTACGTGCCCTTCTTCCTTATCCTGTTCCTCTACTTCACCGGCTGCTTCACCCACAtcaaggaggagaagaagatgCCGGCGTCTGCCTGGCTGCTGGTGGTGCCCAGCGGTCTGTACTACTGGTACCTGGTGACGGAAGGCCAGATCTTCATCCTGTACATCTTCACCTTCTTCGCCATGACGGCCACGGTGATGCACCAGAAACGCAAGGGCTTCGTGCTGGACAGCAACGGCCTCTTCCTGTTCTACAGCTTCTCCCTGGCGCTGGCGCTGGTGGCCATGTGGGTGGCCTGCCTGTGGAGCGACAAGATCCTGAGGAAGAAATACCCCGGGGTCATCTACGTCCCCGAGCCCTGGGCCTTCTACACACTGCACCTCCAGGACCAGCGCTAGCCAGAGCTGCACTGCTGCCCCGGGTCTGTGAGAGGacggcagacagacagacagatagacagacagatagacagacagcaGACAGACGGGGAGCTGTCCTCCGAAGCAAGCTGACTCCCTCTATGCAAAAACAaccaagcacacaaacaaaaacaaacaaaatgcaggtATTTCAGGGGTAAAGGACTCGCACCGGAAATGGAATTGTCTTTtcttactgtttattttttactgtttatttcCCGCCCCCCATCATTAGTTTTTGTGTTAACTAACCTTCCTGTGCTAAGTTGGTACAACCCAGACTGATCCCATTCACCAGGGGGCTTTGCACTGTATTAGCGCCCCCTGCTGCTGATGTTGTTTTACAGCTGTCACAGCATTATTATAGCCTTCTTACTGCACTACTTTTCTTGAATTGTGTACATTCTGTGACAGCTGTATGTCACCTTGGGTAAGAGCATCTactaataaattaacaaataaatgaataataataacaataataatgtgaagGTGTTAAATTTGATAATAAATCCTTCTCTGGACACACGAGACTTGGATAATTCTCCGCAAAATAACTTGGATCTAAACACCACCCTGTTTTTTCATCGTGCACAACCTGCCGACGGGAAGAGTGATCGTCTACCCTGCCGCTGTTGGTGCTGTAGCTCTGTATTCCCACACAACCCGTTCAGAGCGACCCTGGCGAGAGCAGGGCAGGTGGCGGCAGTGTAGGCCGAGCACTCGGTGGGGGAGTGGCTCTGCCTGTGCCTGCTGAGCTGACATGGGCCCTGAGCGAGTCATCCGTCCATGGCACAAACAGGAGcctttttgtaaatgtatatcttCCTTCAGTTTTGGGTGTATGTTCTCCcttgttt

Function

GO: NA

KEGG:

id description
K12359 CLN6; ceroid-lipofuscinosis neuronal protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29673 lncRNA upstream 5267 18202462 ~ 18204361 (+) True G23696
TU29613 lncRNA upstream 146724 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 256353 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 266518 17942776 ~ 17943110 (+) True G23631
TU29595 lncRNA upstream 304679 17904558 ~ 17904949 (+) True G23628
TU29687 lncRNA downstream 5288 18222183 ~ 18224936 (+) False AMCG00007414
TU29781 lncRNA downstream 369279 18586174 ~ 18586536 (+) True G23780
TU29782 lncRNA downstream 371121 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 371971 18588866 ~ 18589068 (+) True G23782
TU29795 lncRNA downstream 407026 18623921 ~ 18625059 (+) True G23791
AMCG00007417 mRNA upstream 8293 18198618 ~ 18201335 (+) False AMCG00007417
AMCG00007416 mRNA upstream 11102 18168450 ~ 18198526 (+) True AMCG00007416
AMCG00007408 mRNA upstream 146135 18062234 ~ 18063493 (+) True AMCG00007408
AMCG00007407 mRNA upstream 150672 18054095 ~ 18058956 (+) True AMCG00007407
AMCG00007404 mRNA upstream 480349 17701160 ~ 17729279 (+) True AMCG00007404
AMCG00007414 mRNA downstream 835 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007428 mRNA downstream 180452 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007433 mRNA downstream 350347 18567242 ~ 18570472 (+) True AMCG00007433
AMCG00007437 mRNA downstream 358947 18575842 ~ 18584276 (+) True AMCG00007437
AMCG00007438 mRNA downstream 373785 18590680 ~ 18596353 (+) True AMCG00007438
TU29676 other upstream 1320 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 7668 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 2921668 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 3719936 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 7596524 10611196 ~ 10613104 (+) True AMCG00007307
TU29705 other downstream 73213 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 350874 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 834447 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2843506 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 4064805 22281700 ~ 22282958 (+) True G24606

Expression Profile