RNA id: AMCG00007416


Basic Information

Item Value
RNA id AMCG00007416
length 3240
RNA type mRNA
GC content 0.59
exon number 25
gene id AMCG00007416
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18168450 ~ 18198526 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGATGCCAAGCTGTGTCTGAAGGGCTGGCTCCCACGTGGCGGTGCTCTACCTCTCATGTACAAGGAGCACAGTGTCCAGAACTGGCCAGGATCAGCCGTCTTCCGCTCTGGGTCTCCAGCACAGATGGCCAGGGCTTTATCAGAGACTTCACATTTCTGCTGGGCTCACCTGTTTGAcaccctgctgtgtgtgtttccaggGGGTAGCGACTCCTTCAACATCGACACCAAGCACCCGCGCATCATCGAGGGCTCTCGGGAGGCGCAGTTCGGCTACACAGTGCAGCAGCATGAGGCGGCGGGGCAGAAATGGTTACTGGTCGGCGCTCCCTTTGAGACCAATGGCCAGCACCAGACTGGGGACATCTACAAGTGCCCactaaacaaaaaaggaaatggcaACTGTTCCAAACTCAACCTAGGAAGGATCTCCCTCACCAATGTGTCAGAGCGCAAGGACAGGATGCGGCTGGGAATGACCCTGACCACCAACCCCAAGGACAACAGCTTCGTGGCCTGCGGTCCCCTGTGGTCCTACGAGTGTGGGAGCTCCCTGTACAGCACGGGCATCTGCTCCCGGGTCAACTCCACCTTCAAATTCTCCCGCACCATCGCCCCTGCCTTCCAGAGGTGTGAGACTTACATGGACATTGTCATTGTTCTGGATGGGTCCAACTCCATCTACCCCTGGTATGAGGTGCAGGACTTCCTCATCAACATCCTACAGAAGTTCTACATCGGGCCCGGTCAGATCCAGGTGGGAGTGGTACAGTATGGGGAGGACGTGGTCCACGAGTTTAATCTGAATGAATACAAAACTGTGGAGGAGGTGGTGAAGGCAGCCAAGAATATCGAGCAGCGTGGGGGGGCGGAGACACGCACCGCCCTGGGCATTGAGTTTGCACGCTCTGAGGCCTTTAAGAAGGGGGGACGGCGCGGGTCCAAGAAGGTGATGATTGTGATCACGGATGGGGACGACCCCGATGACAAGCACTTCTTCAACGTGACAGACGAGGCGGCGCTGAAGGACATCGTGGATGCACTGGGAGAGCGCATCTTCAGCCTGGAAGGCACCAGTAAGAACGGGACCGCGTTTGGGTTGCAGATGTCCCAGGCAGGCTTCTCTGCCCATGTGGTCGAGgaCGGGATCCTTGTGGGCGCAGTGGGGGCATACGACTGGAACGGTGCGGTGTTGAAGGAGACGCGGCAGGGCAAGGTTGTCCCGCTCAAGTCCTCCTATCAGCAGGAGTTCCCTGAGGAGCTGAAGAACCACGGGGCCTACCTGGGGTACACGGTTACATCGTTGGTGTCTGCGCTGAGCGGACTGCTGTACGTGGCGGGAGCACCGCGCTTCAACCACACGGGCAAGATCGGCTCATACTATGGCAGCGAGATCGCCGCGGTGGATGTCAACGGAGATGGCATCACCGACAACCTCCTGGTGGCAGCGCCCATGTTCTTCAGCAGCGGCTGGGAGAGGGGCATGGTCTACATCTACACAGTGACCCAGCAGaGCCAGTTCATCCTGGAGGGGGCGCTGGAGATTTCGGACCGGGTGCAGAATGCACGCTTCGGCTCCTCGATGGCGCCCATCCAGGACCTGAACGCCGACTCCTACAATGAGGTGGTGGTGGGTGCGCCACTGGAGGACGACCACCGGGGGGCCATCTACATCTTCTTCGGCCGGGGGGACAGGATAGTGCGCACGCACAAGCAGGATGGGCTGGTGGACCTGGCGGTGGGCTCACTGGGCTCTGCCGTGCTGCTCTGGTCACGCAGCGTTGTCCAGATTCATGTCAATGTCAGGTTCGAGCCGAACAAGGTCAACATCTTCAACAAGGACTGCCGGAGGGGCGGCCGGGAGGTCACCTGCATGTCAGCCATCGTCTGCCTCAACGTCACGGGCAAGACTCCGCTTACGCCTACACAGGAACTTGGTGAGCCATCACCGAAAACCCACTCCACCGGGCCCCACAACCTCACCCTGTTCCCGGGGGTGCCAGGTTGCCAGCATGTCTACTTCCATGTGCTGGTGAGTGTAAAAGTTGGGCAAAATTGGAGACTGGCCATGGGTATTGCTCTGGCTATGGCAGCcttagggtgtgtgtgtgccagtgctGTGCCAACACTGAGCCAACCGCTCCTCTTTCCCCCCAAGGAGTCCACAGACTACGTGCGTCCTATCGTCTTCACGGTGGAGTACGCCATGCAGGACCCGGACGAGGGGCCTGTGCTGGATGACACTTGGCCCACTGTCGTCAGGACAGAGCTACCTTTTTGGAACGGCTGTGACGAGGATGACCACTGTGTCCCTgacctggtcctgcagagccgCACTGACCTCCTGGACACCAGGCAGTACTGCAGTCTGGGTGTGAGGGTGGGCTGGCCCCTGTGCCGGCGGCAGGGCATGGCACTGGGCTCGGAGCGTGTGGTGGAAGATTCACGGAGGAGGCTGGTGGTGGATGTGCGCCTGGAGAACCGTGGGGAGAATGCCTACGGAGCGCTGCTCAACATCTCCTACAGCCCCAACCTGTACATCTCCAGCCTCTTTGTCAAGGACAACTCAGACATCAGACTGGAGTGCAGCAGCGAGGACAAGCTCAGACACGAGAAGCTGTGCAACGTCAGCTCTCCCTTCCTCCGTGCACAGGCCCAGGTGCGAGAGGAGAAGGCCAGCGCTGACAACACCAACATCATTTTCCACCAGTTGAAATACGAGACAAAACTCCTCTTCACCAGGGACTCCAGCTTGTCCCGCTATGAGATCAAAGCCGACCCCtccacagagaaacacagcggCGTTGGGCCTCCATTCAACTTCACCTTCCAGATACAGAACATGGGATTTTTCCCTGTGAGAGATTTATACCTGAAGATTGAAATCCCAGAGGCCACGATGAGTGGAAACCAGCTGCTGCAGATTGCGGATCTCTCCATCGACCAGACAGATGGGTCCCTCTGCAACACCCCCAGTCACATGACTCGAAGTCGAACATATGCTGAGGATCTGTCCCAGTACCCACAGCTGAATCACTCCAACAGTGTGCCGGCGCTGGTCAGGTGCAGCCTCAACCTGCCCCCTGGCCGGGAGGTCAGCGCTCACATCCGCGGCAGCCTGCGCATCGACACGCTCCGTGCTGTGAGTCATTCACCTCGGGAGCGCTATCTGCTGGCCAGGCTGGGGCTGCACCccaaacaccaccaccaccctaCACCCTGCACCCTGCTCTGA

Function

GO: NA

KEGG:

id description
K06587 ITGA11; integrin alpha 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29613 lncRNA upstream 105546 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 215175 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 225340 17942776 ~ 17943110 (+) True G23631
TU29595 lncRNA upstream 263501 17904558 ~ 17904949 (+) True G23628
TU29567 lncRNA upstream 345113 17821766 ~ 17823337 (+) True G23604
TU29673 lncRNA downstream 3936 18202462 ~ 18204361 (+) True G23696
TU29687 lncRNA downstream 23657 18222183 ~ 18224936 (+) False AMCG00007414
TU29781 lncRNA downstream 387648 18586174 ~ 18586536 (+) True G23780
TU29782 lncRNA downstream 389490 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 390340 18588866 ~ 18589068 (+) True G23782
AMCG00007408 mRNA upstream 104957 18062234 ~ 18063493 (+) True AMCG00007408
AMCG00007407 mRNA upstream 109494 18054095 ~ 18058956 (+) True AMCG00007407
AMCG00007404 mRNA upstream 439171 17701160 ~ 17729279 (+) True AMCG00007404
AMCG00007403 mRNA upstream 492896 17659682 ~ 17675554 (+) True AMCG00007403
AMCG00007402 mRNA upstream 515638 17651631 ~ 17652812 (+) True AMCG00007402
AMCG00007417 mRNA downstream 92 18198618 ~ 18201335 (+) False AMCG00007417
AMCG00007415 mRNA downstream 11102 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007414 mRNA downstream 19204 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007428 mRNA downstream 198821 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007433 mRNA downstream 368716 18567242 ~ 18570472 (+) True AMCG00007433
TU28988 other upstream 2880490 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 3678758 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 7555346 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 8668722 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 9457139 8704657 ~ 8711311 (+) True AMCG00007253
TU29675 other downstream 242 18198768 ~ 18201960 (+) True AMCG00007417
TU29676 other downstream 8552 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 91582 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 369243 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 852816 19051342 ~ 19056133 (+) True G23893

Expression Profile