RNA id: TU29675


Basic Information

Item Value
RNA id TU29675
length 2188
RNA type TUCP
GC content 0.48
exon number 3
gene id AMCG00007417
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18198618 ~ 18201960 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAATGCATCCCTCACTGTCCACAATTAAGCTTTCACTGTCTGCTCTCAGGTGAAGTTCAAATCCCTGATGCTGGTGACCAGAGCCACCATCGAGCTGGAGCCGACCAGCGCCATGTTCCTGCAGGAGGACATGCCTGAGAGACAGATTATCCTGGAGATTAGGAAGGAGGAAGATTACAGGATTCCCATCTGGATTATCCTGGGGAGCACGCTGGGGGGGGTGCTGCTGCTCGCCCTGCTCATCCTGGCTCTGTGGAAGCTGGGATTCTTCCAGCGGCAGAAGCGACACAAGGAGGCAGAGCAGGAGGCCAACGGGAAGGTGATGGAGGAGCGGTAACACAGGGCCTCAACCTTGCCCGGCTCCACGCCTGCCACTGAGGCACTTTCCTGTACAGAGACCGCCGCAGACTGGACACCTGCTCTGCGCCCCTGGGGACTCACCCGCCCTTCATTCTCCCCTGCTCAATCAGCTGCAGCTCCAGGCAGGGCAATATGCTCACCCCGCTGCTCCTGGGCTGGACTGTGccccaccaccatcaccacctaCCAACACACAGACCCACCCCAACCTGTACATATGCCCTGGTCTCCGGTAGCACCGCCTCCACTTACTTACCAACCTGGAGACCTTACAGAAGCACTGGCCTGGACGCACATTGTCCTGACTCCCACAGCCAAAGTCAGATGGTTGCTATGAAGGcccacacatttattttccttttatttttggtttatccCTTTCAGGTatgattgtgttattgttattttgtttgtttgttcttcacaGCTTCATGCCTGTGCCAGCACTTCACTTACACGGTGTTTATTGACGTGACTACGCCCAGCGATCCTGGCTGGTGATGAGTAAACTGTCAGAACAGTCAGATCTGGGCCGAGCTGAGCTCGACTGTGACCTCCctgacacacgcagacacagacACCCATAGCACTGCCCTGTTGAGGAACCCCAAGCTTCTGGGGCAACTTTGATTCaggcactggactggactgctttTTGAGATTTCCTAAAATTGTTCACAATCCACACACTGGTCAGGAAATGACCCTATCCCACCAGAAAGCGCTAAACACAGCACTGGCTTGTACGGGGATGATTACTGTGAGCTAGTGAGAAAAGTTTGCGTTACATtgatatttgttaattttattttgggaaGGTCTGTTCAAATGTCCCCAACAAAGGCTCTTATTTAgtttctgttcagttttttttttatacatttcatacattttctataaaaaaaataataataaaaaaaaaaaaaacagcattgcaGTATTCTAAAGCACTTTTATGTTGTAAAAAACTTGAATCTTGTAAATACCTTcatgtgcttttaaaacagaaCAGCAAAACTTCTGTTGTACCTGCACAAGGATTGTGGCATTATCCTGTAACTATAGAGACACGGCGATACTATTTTAACCTTCACACCAGAGAGCGTCTGTGTTCTGGCCCCGCACAACAAACAGCCTTGCTGTTGGAACAGTACGCACAGTACAGCCTTGCCAGTTTTCTCCATAGGGCGCCGCTGTTCTGAGGGGGCTTGGATCTCAGTCTCCTGCAACACTTCTCTAACACAGTCTGCTTCTGTCTCAGGTTCCCACTGCGCTTCTGGtggtgaaattaaatcaatactggCTTCAATCTGGTTTTGTGTGTAGCTCCCAGGTACAGATTTAATCTATAAAATGCAGCTCAAAGTCTTAAACAGACAGGAGCTGAAAGCAATGTAAAAAGGTCCGATTATAGAAGTCATTGGTCCAATCAGATGCTCATTAGGAACACAGTAACAGATCTGAGGTTATGGAGTGAGCCTGGCTCCGTTCAGAGGATTGTCGGGGGGGAACAGTTTTAGTAGACATAAGAGagctataaatatattgtacagtCAACACTTTGAGAAATGAACCCTGCCTGCATCTGTAATATATGTATTCGCTCATGTCAACAGCAAGGTGTGTAAATATGGTAAtgatgccaaaataaataaataaaagtctgaCTTACTTGGGCCAGCACTGCTTTATATATGTACACTGCACAGACCGGATCCCCCGACCCCACCAGCAGCCCAACACATGGAACACAGCCAGGCCCGGGGCCCCGAAGAGAGTGCTCGGATCTGAGGAGGTGTGCATAAAGCAATCGATCATCAATTTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29613 lncRNA upstream 135864 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 245493 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 255658 17942776 ~ 17943110 (+) True G23631
TU29595 lncRNA upstream 293819 17904558 ~ 17904949 (+) True G23628
TU29567 lncRNA upstream 375431 17821766 ~ 17823337 (+) True G23604
TU29673 lncRNA downstream 502 18202462 ~ 18204361 (+) True G23696
TU29687 lncRNA downstream 20223 18222183 ~ 18224936 (+) False AMCG00007414
TU29781 lncRNA downstream 384214 18586174 ~ 18586536 (+) True G23780
TU29782 lncRNA downstream 386056 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 386906 18588866 ~ 18589068 (+) True G23782
AMCG00007416 mRNA upstream 242 18168450 ~ 18198526 (+) True AMCG00007416
AMCG00007408 mRNA upstream 135275 18062234 ~ 18063493 (+) True AMCG00007408
AMCG00007407 mRNA upstream 139812 18054095 ~ 18058956 (+) True AMCG00007407
AMCG00007404 mRNA upstream 469489 17701160 ~ 17729279 (+) True AMCG00007404
AMCG00007403 mRNA upstream 523214 17659682 ~ 17675554 (+) True AMCG00007403
AMCG00007415 mRNA downstream 7668 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007414 mRNA downstream 15770 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007428 mRNA downstream 195387 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007433 mRNA downstream 365282 18567242 ~ 18570472 (+) True AMCG00007433
AMCG00007437 mRNA downstream 373882 18575842 ~ 18584276 (+) True AMCG00007437
TU28988 other upstream 2910808 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 3709076 14478673 ~ 14489692 (+) True AMCG00007337
TU28420 other upstream 7585664 10611196 ~ 10613104 (+) True AMCG00007307
TU28037 other upstream 8699040 9436524 ~ 9499728 (+) True G22372
TU27900 other upstream 9487457 8704657 ~ 8711311 (+) True AMCG00007253
TU29676 other downstream 5118 18207078 ~ 18208308 (+) True G23698
TU29705 other downstream 88148 18290108 ~ 18292338 (+) True G23724
TU29768 other downstream 365809 18567769 ~ 18570464 (+) False AMCG00007433
TU29920 other downstream 849382 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2858441 21060401 ~ 21066783 (+) False AMCG00007514

Expression Profile