RNA id: AMCG00007418


Basic Information

Item Value
RNA id AMCG00007418
length 4118
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00007418
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18202459 ~ 18208020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGACaacaagaaagagagaagaaaccCCACCGAGCACGACCGAGCTGCTGAGCCCGGGGAGTCGCTGAGAGAGGACGGCGGCCAACCGGCACAAGGGCCCCCTCAGTCGAGTGACCTGCGGGTCGCTCCCTGCACCCCGACCGCTGGGAACCGAGCCGAGCTTGTGCCATTTAGCTGACGTTTCCATTCTCCGTTTGATGAATTAAAACACGTATATCCACGTATGGTTTAATATAACCCTACGTGCTCGCCTGTGGTATCCGTGCTACCCACAGATTTGACCCTAGAGCAGACCTACATCTTCACATAACGTAGGGTCGCTGGCCGTCCGCAGAGGGACCTCTAAACCACCGGCATGTTTTTCGAGTGAGCAGCGTGATCCGTCCTGGGATTTTTAATGGGAGGCGGCCTGCTTTGCGGAGAGTCTAGTTGTGGGCGACTGTTTCTGCGCAGAAGACGGAGGTGTCTCCGGGGAAGGCCAGGCGGCGGGCCTGAATGGAGTCGCTGGCCGCATACGTGTACAAGGCGGCGAGCGAGGGCCGGGTCCTGACGCTCGCCGCCCTGCTGCTCAACCACAGCGAGGTCGAGACCCGCTACCTGCTCGGCCATGTGACCCAGCACGGCGGCCAGCGCTCCACGCCGCTCATCATCGCCGCCCGCAACGGACACGCCAAGGTGGTCCGGCTGCTCCTGGACCACTACCGGGTGGACACCGAGCAGACCGGCACCGTGCGCTTCGACGGGTATGTGATTGACGGGGCAACTGCGCTGTGGTGTGCGGCGGGGGCGGGGCACTTCGAAGTGGTGCGTCTATTGGTCCTACACAATGCCAACGTGAACCACACAACGGTGACAAACTCCACGCCGCTGCGTGCTGCTTGCTTTGACGGGCGTCTGGACATCGTGCGCTACCTGGTGGAGAACAACGCAAACATCTGCATCGCTAACAAGTACGACAACACCTGCCTGATGATCGCTGCTTACAAGGGCCACACTGATGTGGTGCACTTCCTGCTGGAGCGTGGCGCAGACGCCAATGCCAGGGCGCACTGTGGCGCCACTGCCCTGCACTTTGCGGCCGAGGCAGGGCACCTGGACATCGTAAAGGAACTGGTACGCTGCAAGGCGGCCATGCTGGTGAATGGTCATGGCATGACGCCCCTCAAGGTAGCAGCAGAGAGCTGCAAGGCCGATGtggtggagctgctgctggCGCATGCCGACTGTGACCGGGAGAGCCGTGTGGAGGCGCTAGAGCTACTGGGTGCCTCCTTCGCCAATGACCGCGAGAACTACGACATCCTGAAAACCTACCACTACTTGAACCTGGCCATGCTGGAGCGGCACCGGGACTCTGTGCACATCCTGGCCAAGCAAGTGCTGCCACCCGTCGAGGCGTATGGCGGCCGCCGTGAGTGCCGCTCCCCGTGTGAGCTGGAGGCCATCCGCCAGGACCGAGATGCACTGCACATGGAGGGCCTGATCGTGCGTGAACGCATCCTGGGCGCTGACAGCATCGACGTCTCGCACCCCATCATCTACCGCGGCGCCGTTTACGCTGACAACATGGAGTTCGAGCAGTGCATCAGACTGTGGCTGCACGCGCTGGAGCTGCGGCAGAAGGGCAGCCGAAACACGCACAAGGACCTGCTGCGCTTCGCCCAGGTGTTCTCACAGATGATCCACCTAAACGAGCCGGTGCGTGCGCAGGATGTGGAGGCCGTGCTGCGCTGTAGCGTGCTGGAGATCGAGCGCAGCATGGCGCGAGTGCAGGCGGCCCCCGAGCCCGAGCTGCCCGCAGCGCTGGACAACTATGAATCCAATGTCTTCACCTTCCTGTACCTGGTATGCATCTCCACCAAGACGCAGTGCGGCGAGGACGAGCGGTCGCGCCTCAACAAGCATATCTACAACCTGATCCAGCTGGACCCGCGCTCTCGGGACGGCTCCTCCCTGCTGCACCTGGCCGTCAATGCCGGCACGCCGGTGGACGACTTCCACACTAATGATGTGTGCAGCTTCCCCAACGCGCAGGTGAGCAAGCTGCTGCTGGACTGTGGCGCCCAGGTGAACGCTGTGGACCTGGAGGGCAACAGCCCGCTGCACGTCATCGTGCAGTACAACCGGCCCATCAGCGACTTCCTCACTCTGCATGCCATCATCATCAGCCTGGTGGAGGCCGGCGCCCACACTGACATGACCAACAGGCAGAGCAAGACGCCTCTGGACAAGAGCACCACGGGCGTGTCCGAGATCCTGCTCAAAACCCAGATGAAGATGAGCCTCAAGTGCCTGGCCGCTCGCGCCGTGCGGCTCCACCACGTCAGCTACAGGAACCAGATCCCCAAGACGCTGGAGGAGTTTGTGGAGTTCCACTGAGAGGGACTCGCACACAGACCTGCAAACAGCAACACAGACTGTCTTTTAACtcttattgcttttgttttttttcagttcttgtttttaattaaaaaatatggtGCTGGGGATAATTACAGATCAATTAAAACCATAACAACAGAGAATttatgagaatatatatattttaccagattttttttttattttcttgtgagCATGAAGTGTAATTACCAGCACTCTGAAAGGGCATGTTGTAATTCCCATAGGGTGTGGCTtttgtgtggcagtgtgtgctAGTACAGCCTTGAGTGTGGCGGGGGTGTGTATCTGCATCAGTCCTGCTGTGCTGTTTGTCGGTGCGAATGTGTCCCAGAGAAACTTGACGGCAGAGCTCTAAGATGGAGCGGCAGGTTAATGCCGGCACGGTGCAGACGCCACATTAGAACTCAAcaaatgctgtttaaaaataaaagtaagaacATGTTGTCAGTGCAGCGGCGAGGCCGGCAGCCAGAGCAGCAGTGTGGGGGAGGAGAGCGAGTCTGACAGAGAGAGCGCCTCCCACAGCTGCCCTGCATCATCTGCATGGGCTGCATCATCTGCAGTGTTCCTGTTTAACTGCTTCTTTGCCGGCGTGGCTGGGCGCCCCCCCCCAGCTGCAGGCCCTTCCTGGCAGTGTTTGAGTGTCTGTTTCAGACTGCAGTGAGGTGAAGCAGGATTGAGCAGAGAGGCAGCGTTGTTGGCAGCTCCGTAATACCACTGCGCTTCTCTTCATCAGCAGGTTGTCACTTAattgccagtgtttttttttttttatatatatacatattttttttaattttagtcatgtaattttgtattttttaatttatttcatactAAAGAAGGTTAAAATAGCCCCAGAGTTAAAGCTGTGGGGGGCTTTTGGAGGGCACAGCACTGAGATGCTCTTGGGTATCTTTTACATCACAGAGCAGGCTTTTGGAAGAAAGAGCCATTGGTACTGTACCTAAAAAGAAATCAGTCTGTTAGGGGCAGATCTCGCTGCTTTACGTTATGGCCACAGTGGTCATCAGGCTTGAGAGGGAGGGAAGTTGAACACAGCGCAGGGTGTCACTCTGTGGGGGAGTTGATACAGATCCACTACTGGGCTGCACTTTATTCTTATGATGATAGTCCCTATCAATCTTTAGGTAACGCCTctttttattcaaaattaaaaaggcagttgaaaattatattttaaaaaatctgcCAGCTATATTCTAAAgctaaaaattacaaaataatctataaaagGAAGAGGGAGGAGTGTAGCACTGTGGTGGGGGTGGCGGGGTCTGGTCTCGCGTCTCCAGCACAACCTGCCGCTTTTTCCTGTTCCATATCTTTGCAGTTGTGCCGATTCTTGAGTCATTGTAAATGCATGTTGCACCTGATGAACAGtcattgttttgcattcaaaGTTCAGGGTTCAGTCCATATGCTGCATGCTGGATATCATTGGCAGCGCTACACAGCCGAGTAAGGCCTCAGAGCAGGTTCTGGGGTTAAAAGAAGTGTGAAaacatgtctgtatatatgatGTTATGCAACACCATCTCCAGCTACCATGGTTTAAGTAACTCCTCTGTAATTTAGTTCTCATTGTTGGGTGTTTTTAAACGACCTACAATTACAGTGCACTCAGCCTTCTGGATGTCAGCTTGCGTGTGAactgcgggggggggggggggggggggggggggggggggg

Function

GO: NA

KEGG:

id description
K10349 FEM1B; Fem-1 homolog b

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29651 lncRNA downstream 128996 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 140009 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 296593 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 379683 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 428155 17774551 ~ 17774846 (-) True G23620
TU29732 lncRNA upstream 106131 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 411265 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 504057 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 569825 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 571151 18779171 ~ 18779608 (-) True G23840
AMCG00007413 mRNA downstream 87242 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007410 mRNA downstream 125469 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007412 mRNA downstream 154783 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 211141 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 224479 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007419 mRNA upstream 16311 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 57394 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007422 mRNA upstream 82072 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007427 mRNA upstream 92835 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007426 mRNA upstream 98857 18306877 ~ 18310368 (-) True AMCG00007426
TU29633 other downstream 144052 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1581096 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1880350 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1880350 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4256936 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 568340 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1707126 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2123493 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2263091 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5763651 23971671 ~ 23972665 (-) True G25026

Expression Profile