RNA id: TU29680


Basic Information

Item Value
RNA id TU29680
length 1448
lncRNA type sense_over
GC content 0.48
exon number 1
gene id AMCG00007418
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18202459 ~ 18208020 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taattttgtattttttaatttatttcatactAAAGAAGGTTAAAATAGCCCCAGAGTTAAAGCTGTGGGGGGCTTTTGGAGGGCACAGCACTGAGATGCTCTTGGGTATCTTTTACATCACAGAGCAGGCTTTTGGAAGAAAGAGCCATTGGTACTGTACCTAAAAAGAAATCAGTCTGTTAGGGGCAGATCTCGCTGCTTTACGTTATGGCCACAGTGGTCATCAGGCTTGAGAGGGAGGGAAGTTGAACACAGCGCAGGGTGTCACTCTGTGGGGGAGTTGATACAGATCCACTACTGGGCTGCACTTTATTCTTATGATGATAGTCCCTATCAATCTTTAGGTAACGCCTctttttattcaaaattaaaaaggcagttgaaaattatattttaaaaaatctgcCAGCTATATTCTAAAgctaaaaattacaaaataatctataaaagGAAGAGGGAGGAGTGTAGCACTGTGGTGGGGGTGGCGGGGTCTGGTCTCGCGTCTCCAGCACAACCTGCCGCTTTTTCCTGTTCCATATCTTTGCAGTTGTGCCGATTCTTGAGTCATTGTAAATGCATGTTGCACCTGATGAACAGtcattgttttgcattcaaaGTTCAGGGTTCAGTCCATATGCTGCATGCTGGATATCATTGGCAGCGCTACACAGCCGAGTAAGGCCTCAGAGCAGGTTCTGGGGTTAAAAGAAGTGTGAAaacatgtctgtatatatgatGTTATGCAACACCATCTCCAGCTACCATGGTTTAAGTAACTCCTCTGTAATTTAGTTCTCATTGTTGGGTGTTTTTAAACGACCTACAATTACAGTGCACTCAGCCTTCTGGATGTCAGCTTGCGTGTGAactgcggggggggggggggggggggggggggggggggggtccttgAGGCTGctgtctctctgcctgcctgcctccctgtAGTCCAGGCACTTTTGGTTTTATTGCATCTCGGCTATTTCTCGAGCGGCCATGAGATGTCAATCAGACACACAAATAGGCAGCAAACCTGCTGGACAGAGCCCTGCCAGGCTGCATTGGCATCTTTGTGGTGGCTGCCCTGGACTTGCAGTTTAAAGCAGGGCTCAGTGTGCCCAGGCTGCAGAGGTCGACATGTAGATGCACCTGTTGATGGTTCATGCTGTATTTCCAGAGAATGCCAATGTCTGGTCTCATATGCGTCTTGTACTGGACACCCGTCTGTCCCTGGTGTGCGCATGCTCTGGCTGTTTACCCGAGGGGATGCATGTCTCCAGTCTCCACCCCCGTTTCTTGAGCCATGGGAACGCTGTCGTGTCTCGTGGGTCTGACTGAGCAGGCTTGTCTGAGCTGAATGTGAATGTAAGGGCTTTCTGATCAACGACACAAACGCTGTCGTGTGTTGACACTTCCTGTGTAACCAGCGATTGTACTGtaaatgggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29651 lncRNA downstream 128454 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 139467 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 296051 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 379141 17821767 ~ 17823318 (-) True G23624
TU29583 lncRNA downstream 427613 17774551 ~ 17774846 (-) True G23620
TU29732 lncRNA upstream 110245 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 415379 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 508171 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 573939 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 575265 18779171 ~ 18779608 (-) True G23840
AMCG00007413 mRNA downstream 86700 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007410 mRNA downstream 124927 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007412 mRNA downstream 154241 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 210599 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007411 mRNA downstream 223937 17962721 ~ 17978522 (-) True AMCG00007411
AMCG00007419 mRNA upstream 20425 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007420 mRNA upstream 61508 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007422 mRNA upstream 86186 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007427 mRNA upstream 96949 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007426 mRNA upstream 102971 18306877 ~ 18310368 (-) True AMCG00007426
TU29633 other downstream 143510 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1580554 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1879808 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1879808 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4256394 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 572454 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1711240 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2127607 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2267205 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5767765 23971671 ~ 23972665 (-) True G25026

Expression Profile