RNA id: AMCG00007419


Basic Information

Item Value
RNA id AMCG00007419
length 2154
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00007419
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18224331 ~ 18237308 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAATGAGGCGACACTGAGGAGCTGTCGGCTGCAGACCAGGCAGCCCCCTGATTGTTCCCACTTCCTGTCTGAGTGGGATGATAATGGGCTACAGCAAATGGTTATGAGCCTTCGTGTTTCGGAGCTCCAAGTACTACTGGGATACGCAGGGCGGAACAAGCACGGACGCAAGCACGAACTCTTAACAAAAGCACTGCACCTCCTGAAGGCCGGCTGCAGCCCCGCTGTGCAAATGAAAATCAAAGAACTGTACAGGCGCAGGTTCCCCACCAAAATGGTGACGCCGGCGGAGCTGGCCCTGCCCAGCGTGCACTCCACCACTGCACCGCTGCCCTCCGGCCTGCCCCAGCTGGGTTTCGAGGGCCACGCTGCCACCTCGCCCCTGCTGCCCGCCTCCCTGCTGGGGCCCAAGCACGAGCTGGACCTGCCACACCTACCCTCTGCCCTGCACCCTGTGCACCCCGACGTCAAGCTGCAGAAACTGCCTTTCTACGACATGCTGGACGAGCTGATCAAACCCACCAGCCTGGCTTCGGATAACAGCCAGCGATTTCAGGAAAcgtgttttgcttttgcattaacaCCTCAGCAAGTACAACAGATCAGCAGCTCAATGGACATCTCTGGGACCAAATGTGACTTTACTGTTCAAGTTCAGCTGAGgTTTTGTCTGTCGGAAACGAGCTGTCCTCAGGAAGACCACTTCCCACCCAACTTGTGTGTGAAAGTGAACGGGAAGCCCTGCAACCTCCCTGGATATCTTCCTCCAACCAAAAACGGTGTAGAACCAAAGCGACCCAGCCGCCCCATCAACATTACCTCACTGGTGCGGTTGTCCACAACAGTACCCAACACCATCGTGGTGTCGTGGACAGCGGAGATTGGAAGGCTGGGGAAGATGCGGCTGATGATCCCTTGCCGAGCGCTGACCTGCTCACACCTGCAGTGCTTCGACGCCACACTCTACATCCAGATGAACGAGAAGAAGCCCACGTGGGTGTGTCCTGTCTGCGACAAGAAAGCCCCTTACGAGCACCTCATCATCGACGGGTTGTTCATGGAGATCCTGAACAGCTGTGTTGACTGTGACGAAATCCAGTTCAAGGAGGACGGCAGCTGGGCCCCCATGCGCTCGAAGAAGGAAGTGCAGGAAGTGTCCGCGTCGTACAACGGCTCGGAAGGTGCCTGTCGGACCTCGATGCCCGAGCACAGGCTCAGCAGCTCGTCCGGCAACAAGAAGGTGGAGGTGATCGACCTGACTCTGGACAGCTCCtccgaggaagaggaggacgaCGAGCCTCCCCCGAAGAGAAGCTGCCCCTCCCTGTCCCCGGCGTCGCCGCCCGTCAACAAGGGGGTGTTGAATCTGCACCACCAGGCCTCTCCGGTGGCCCGGACTCCCAGCATGCCCGCGGTGGACACCAACTacatcccccccccaccgcctCTCATCCAGGACTACCGCCACTCCTACCACACACTGCCCTACGAACTGCAAGGTCTTGATTTCTTCTCCTTCTTACAAGGCGACAATCAGCATTACAGCACCAACCTGCTGGTggcagcggcggcggcggcatCCGCCTCGGAAGAGCACGACATGCTGCACCCGTCGCTCAACCGCTTCCTGCCGTACAGCCCCTCCCAGCTGTACCTGGAGCAGCCGGGGACCCCGGTGAGCAGCACGCTGGCGCCGGGCAACGgggggagcagcagcagcagcagcagcagcctggtGTCGTCCAGCAGCCTGCGGGAGAGCCACGCCCACCCGGGCCCCACCAGGGCCACGGCGGAAGCGGCCGCCGCCATCTACGGCTCCATCCCCGACGTCATCTCACTGGACTGACTGCCGGAGTGCGGCGCGGTCTGATCTCCTCTACTAATGtagacagaaacaaacacacttaaaaagaaaaaaataaacaaaggaaaaaaaaaagtaggtcttttttttttaagatacaaTGAACGATGCTGTGtacagagaacaaaaaaatatattttcagttttacttttgtATATAAACTTAGGACGTTGCCTGTCCAGTGAGTAACTTCAGTTGATATTTTTTGTGGATACTGAAGATTTTTTCACAGTTATACATTTGTTgtccctattattattattattattattattattattatt

Function

GO: NA

KEGG:

id description
K04706 PIAS1; E3 SUMO-protein ligase PIAS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 20425 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 150326 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 161339 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 317923 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 401013 17821767 ~ 17823318 (-) True G23624
TU29732 lncRNA upstream 76843 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 381977 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 474769 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 540537 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 541863 18779171 ~ 18779608 (-) True G23840
AMCG00007418 mRNA downstream 16311 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007413 mRNA downstream 108572 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007410 mRNA downstream 146799 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007412 mRNA downstream 176113 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007409 mRNA downstream 232471 17980242 ~ 17991860 (-) True AMCG00007409
AMCG00007420 mRNA upstream 28106 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007422 mRNA upstream 52784 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007427 mRNA upstream 63547 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007426 mRNA upstream 69569 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007424 mRNA upstream 82660 18319968 ~ 18329876 (-) True AMCG00007424
TU29633 other downstream 165382 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1602426 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1901680 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1901680 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4278266 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 539052 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1677838 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2094205 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2233803 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5734363 23971671 ~ 23972665 (-) True G25026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025477 True 2214 mRNA 0.51 14 NC_007129.7 19990415 ~ 20025364 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_04219612_04232778.mRNA True 2142 mRNA 0.51 14 CI01000013 4219586 ~ 4233151 (-)