RNA id: AMCG00007420


Basic Information

Item Value
RNA id AMCG00007420
length 2395
RNA type mRNA
GC content 0.61
exon number 7
gene id AMCG00007420
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18265414 ~ 18275251 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACTTCCAGGGATGGAGGCGATTCCCAGCCAACTGACAGCGGGACGAGACTCCAGCTCTTCCCCGAACTCCAAGCAGGAACTCCAGCCTTACTCCGGCTCCAGCTCCCTCAAGCCCAACCAGGTCAGTGAGACCGTGCTGTACGGAGTGCCCATCGTGTCCCTGGTGATCGACGGTCAGGAGAGGCTTTGCCTGGCGCAGATATCCAACACTTTACTAAAGAACTACAGCTACAACGAGATCCACAACCGGCGGGTGGCCCTGGGCATCACCTGCGTGCAGTGCACCCCTGTGCAGCTGGAGATCCTGCGGAGGGCGGGGGCCATGCCCATCTCCTCCCGGCGCTGCGGCATGATCACCAAACGCGAGGCCGAGAGGCTGTGCAAGTCCTTCCTGGGGGCGCACAACCCACCCAAGCTGCCCGAGAACTTCGCCTTCGACGTGTCCCACGAGTGCGCCTGGGGCAGCCGGGGGAGTTTCATTCCGGCCCGGTATAATAGCTCCAGGGCCAAGTGCATTAAGTGCACCTACTGCAACATGTACTTTTCTCCCAACAAGTTCATCTTCCACTCGCACCGCACCCCGGAAGCCAAGTACACGCAGCCAGACGCTGCCAACTTCAACTCCTGGAGGCGCCACCTGAAACTCACAGACAAAAACACCTCGGATGATCTGGCCCATGCGTGGGAAGATGTAAAGGCCATGTTCAACGGGGGCAGCCGCAAGAGGACGCTGCCCATCAGCGGGTCAGGCGGGGGCTCCTCTTCCCTAAAACCTCAGGGCTCCGGCAGCCTGCCCCCGGGCTCCCCCGAGGTCCCCCACAAGACTCTGCGCTGCAGCGAGGAGGAGCGGGGCGGCCTCAGCCTGGGCAACGGCGTGCGCAGCTACCCGGTAATCCCCGTGCCAAGCAAGAGCTTCGGGATGCTGCAAAAGATCCCACCGCCCCTCTTCCCGCACCCCTACGGATTCCCCGCTTTTGGATTGTGTCAAAAGAAAGACGACAGTGTGGGGATTGGAGAGCAGAATAAGAGCAATCTGCCCGGCGTGTTTTGGCCGGGCGCAAAGGACAGCGTCTACCCCTCATTCCCCATGTTCTGGCCCACCACTGCCAGTCTGCCCGTGCCCCCCTACCCACAGAGTCAGCCCAAGCCCACGGCCGAGTTGCTCAGCCGGCAGAGTGAGCTGGACGTATCGGAGCAGAGCGACCGCAGCACAAACACCCCCAAGGACAGCCTGGCGGACAGCGAGAGGTGCTCCAGCACGCAGTCCACCAGGAACGAGGAGGACAAGTCAGGGGACGAGGCCCGGTCCACAGAAGGGTCGGTCATGACTCCCAGGAAGATCAGCTACATCTCCGCCTTCAGGCCGGTGGTCAAAGACGCCGAGAGCATAGCCAAGCTGTACGGCAACAGGGAGCCGTACAACGGGGCCCGCTCGGGTTACCTCTCGCCAGACTTCATGAGCGAGAGCTCCAGTTACAGGTCGGTGTCACCAGGCATGGACAGCGTGGACGAGCCGGAGGTGGACGTGGAGTCGCACAGGATCCCAGAGGACGAAGAGTCCCTTCAGCTGTCGGTGGAGGACCGccacagccccccacccctgcccctTCCCCATGCCAGCCCCGGCAAGAGCCAGGAGCCCGGGGTCGAGCTAAGGGCCGCCTCGGTGCACAGTCAGAGAGCCAGTTTCAGTGAAGGGTCCTCGGACGAGGAGAGGCAGGGCGACCCGCTGCCTGACAGCAACAGCACCACGGCGGCTTACGAAGTGTACACACATGAAAGGGAAGATCAGGTGCAGTCCTTGAGCGCCCCGGTTCCCTTCGCTTCCTCCGGCAGTTACGCCAACAGCCCGGCGGACACCAACGaTGAATTGCAGAAACAGCTGGTGGAACAGGTGGAAATCAGGAAAAAGCTGGAACGGGAATTCCAGAGTCTGAAAGATAATTTTCAGGATCAGATGAAAAGGGAGCTTTCGTACAGAGAAGAGATGGTTCAACAGCTCCAGATTGTCCGAGATACTCTGTGCAGTGAGCTGGACCAGGAGAGGAAGGCTCGCTATGCCATTCAGCAGAAGCTCAAAGTTCAGTCTATccagaggaagaaaatgaattcagttagacagacacacagacgggCAGCAGACAGGCCCGCCGTGGTTGTAAGTGATGTATCCACTTTCTCCCCAGAAGCTCACGACGCGCTTCACCATTTCTCCTATGCTGACCCCTCGGCACTGCACTGGAACCTGCTCCTTCAAGCCGCCTCTGCTGCCCCCATAACCCGGGCCCAGCCGCCCCCGGACCTGGACCCGGACTCGAACACAAGCCATTACTTCCCAGCACCTGGACTGTACATACAGAGGGGTCAGACTATCGCCGCGCCGTGGGCAGACTTT

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 61508 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 191409 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 202422 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 359006 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 442096 17821767 ~ 17823318 (-) True G23624
TU29732 lncRNA upstream 38900 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 344034 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 436826 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 502594 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 503920 18779171 ~ 18779608 (-) True G23840
AMCG00007419 mRNA downstream 28106 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007418 mRNA downstream 57394 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007413 mRNA downstream 149655 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007410 mRNA downstream 187882 18065426 ~ 18077532 (-) True AMCG00007410
AMCG00007412 mRNA downstream 217196 18038835 ~ 18048218 (-) True AMCG00007412
AMCG00007422 mRNA upstream 14841 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007427 mRNA upstream 25604 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007426 mRNA upstream 31626 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007424 mRNA upstream 44717 18319968 ~ 18329876 (-) True AMCG00007424
AMCG00007425 mRNA upstream 67772 18343023 ~ 18346193 (-) True AMCG00007425
TU29633 other downstream 206465 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1643509 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1942763 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1942763 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4319349 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 501109 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1639895 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2056262 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2195860 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5696420 23971671 ~ 23972665 (-) True G25026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_04012800_04017022.mRNA True 2401 mRNA 0.53 5 CI01000304 4012800 ~ 4017277 (-)