RNA id: AMCG00007421


Basic Information

Item Value
RNA id AMCG00007421
length 1622
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00007421
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18359142 ~ 18361385 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGGGGACGCTTACGAAGGATAAGTGAAAacaaggataaataaataaactacattttaaaaaattaaaagtgaacAACACACCTAAATGCGTTCACGTCAACAGCGAGCGGCCCTGCGTGAAGGTCGACAGTGTCAGTAACGTCTATAGCGCATGCGCAGTAAAGCAGCTGGCCCGTGTAGCCGGGCTCGGTGCTGCTGCCAGTTCAGCCCAATGGAGGTCAGCGGCCTGTTTACTTGAATTTCGCAGATCACCGTCTCCTGTCAGCGATGATACTGGAGAAAgaTACTGCAGGTGTCCTGTGCGTCACAGTAGTGCCTACAGATGACAGGAGTTCTGGGCCCATGGAGATCACATGGCCCCGCAGTGATACCACTGTGTGTGAGTCCCCTAAAGCCATGAGGGCAGTACTGCGCTGCATCCACACCGCCCTATTGAGGGTCCTGCTCTTCCCGGGTTCGAGTCTGTGGCGCAGACCGTCCCCCCGCCGCCCCCCGGCCTCTGAGGTGCTGAGCTGCCACCTGGCGCAGCGCCGTCTGCCACCCTGGACGTCGTTCTGCGTGCCGTACCGCTCCGTGCACAACGACCAGTTCGGCCTGTCGCACTTCAACTGGGCCGTGCAGGGCGCCAACTACCAGGTGCTCCGGACCGGCTGCTTCCCCTTCATCAAGTACCACTGCTCCCGCGCCCCCCCCGAGGACCTGGCGCTGCAGGACACGTTCTTCACGGCACTGAAGGTCATCAACCTGGGTATTCCCACGCTGGCTTATGGGCTGGGCTCGTGGATGCTGGTGGGAGCGAGGGAGGTGGTACAGACCAGCGCCGGTCCGGTGACCGTGTACTTCCTGTATAAGGAGGAAGAGGGGGCGCGCTTTTAATGCATCCCCAGCAAGCGCAGCGAGGGAGGCCGGTCCCCTCTCTGAACACGGACACTTCGTATCGAACACCcttgtatataaaacaatcttGCACTCTTAGTTTTATCTAACCATTAGTTTTcagtaatgtgtttatttccttttagtGAATGATTTGAcatactgttttattatgtttttttttcccctctctccagAAGTGTCAGCTCACGTTGAAACTAATAGTGACATCTTTTGCCTTTTTCATAGAAATACTGAAGaagtgttaataaaaaaaagccacCCAAAAAAGCTGGGTCTGTTTTCTATTTGAATTTGCTGAATTTCCCTGCTAATGCAGAAAGTTAAATAACTGCAGCTCATATGTTTAAAGTCAAATAGTGCTCCCTCACTGCCAGGCCGGCTGTCGATAGTGACGCGAGTTAGCGTCTGACGAAATGGTTTTTAATTACCAGACAGTGAATGTGGCCTTCCTGCAGAGCCCCCCTGCACCCAGGCCGGCCGGTGGCTTTGATTTCTGATACCGCACAGTGCTGACGGGGCAAACCTGTTACTCAGCCAGTTTTGACAAACTGCTCTATTGATCCCCCCATCCCGGCCCACGCCGGCCCCCTGCTCCCCACTCCCTCCGTTAATCTTCGTGCTGCTGGAAGCATTAATCCTGGCTCTTGATTTCCTGGCCTCACTGTCTGTGCCTCTCCTTCTGTGTAACAATTAGGGCGAAGTAATAATTTCTTGTATTAC

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006082 organic acid metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0051186 obsolete cofactor metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0051188 obsolete cofactor biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0017144 drug metabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0006732 obsolete coenzyme metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0043436 oxoacid metabolic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0044283 small molecule biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0032787 monocarboxylic acid metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0034404 nucleobase-containing small molecule biosynthetic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0019752 carboxylic acid metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 155236 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 285137 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 296150 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 452734 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 535824 17821767 ~ 17823318 (-) True G23624
TU29805 lncRNA upstream 257900 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 350692 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 416460 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 417786 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 419452 18780837 ~ 18781092 (-) True G23842
AMCG00007423 mRNA downstream 6416 18348154 ~ 18352726 (-) True AMCG00007423
AMCG00007425 mRNA downstream 12949 18343023 ~ 18346193 (-) True AMCG00007425
AMCG00007424 mRNA downstream 29266 18319968 ~ 18329876 (-) True AMCG00007424
AMCG00007426 mRNA downstream 48774 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007427 mRNA downstream 54824 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007430 mRNA upstream 869 18362254 ~ 18397041 (-) True AMCG00007430
AMCG00007429 mRNA upstream 42836 18404221 ~ 18416448 (-) True AMCG00007429
AMCG00007431 mRNA upstream 66012 18427397 ~ 18427606 (-) True AMCG00007431
AMCG00007432 mRNA upstream 113765 18475150 ~ 18482530 (-) True AMCG00007432
AMCG00007434 mRNA upstream 134805 18496190 ~ 18503391 (-) True AMCG00007434
TU29633 other downstream 300193 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1737237 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2036491 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2036491 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4413077 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 414975 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1553761 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1970128 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2109726 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5610286 23971671 ~ 23972665 (-) True G25026

Expression Profile