RNA id: AMCG00007424



Basic Information


Item Value
RNA id AMCG00007424
length 852
RNA type mRNA
GC content 0.55
exon number 12
gene id AMCG00007424
representative True

Chromosome Information


Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18319968 ~ 18329876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCAGAGATGCGGTCTCTGAATCCCAGGGCCCATCACGTGCCGAGCGGGAAAGTCTTAGCTGTGAAGGTGATTCCTCTAGACATCACGCTGGAACTGCAGAAGCAAATCATGTCTGAGCTGGAGATTCTGTACAAGTGCGACTCCTCCTACATCATAGGATTTTATGGCGCGTTTTTTGTGGAGAACAGAATATCCATATGCACAGAATTCATGGACGGCGGCTCTCTGGACGTGTACAGGAGAATCCCGGAGCACGTTCTGGGCCGGATCGCCGTGGCGGTCACCTGCAGCGTTGATGCCATGGCCGCTGTAAACACTCCCTCTCTTTCACTGCAGGTGGTCAAGGGCCTCACCTATCTGTGGAGCTTGAAGATTTTACACCGAGACGTCAAGCCGTCGAACATGCTGGTGAACACACGCGGCCAGGTGAAGCTCTGTGACTTCGGAGTGAGCACTCAGGGAGTCAAGACAGACGCCTGGCTTGCATTGTCCTTCACTGAGGTGGACACCTGTCCCGGAGCGTGCATTGGGTCAGAGCCAGTCAGAAACGCCAGCCTGAATCTCACCCCCTCATCCCCTGCTCTGGGCATAGGGTGGCCCTGGATCTACAAGGGCAGCTGCTACCTTGCTAGGCCAttagTCAACTCCATCGCAAAAACCTACGTGGGGACGAACGCGTACATGGCGCCTGAGCGGATATCAGGGGAGCAGTATGGGATCCATTCAGATGTGTGGAGTCTAGGGATCTCCTTCATGGAGGTGTCCATGGGTGCCCTCTGGACTGGCAGTGATGATTCGCCACTGTTTCATGTCTCGTGCAGCTACAGTAAGGGGTTCTGGGTTGGGTAG

Function


GO: NA

KEGG:

id description
K04463 MAP2K5, MEK5; mitogen-activated protein kinase kinase 5

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 116062 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 245963 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 256976 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 413560 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 496650 17821767 ~ 17823318 (-) True G23624
TU29805 lncRNA upstream 289409 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 382201 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 447969 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 449295 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 450961 18780837 ~ 18781092 (-) True G23842
AMCG00007426 mRNA downstream 9600 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007427 mRNA downstream 15650 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007422 mRNA downstream 25398 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007420 mRNA downstream 44717 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007419 mRNA downstream 82660 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007425 mRNA upstream 13147 18343023 ~ 18346193 (-) True AMCG00007425
AMCG00007423 mRNA upstream 18278 18348154 ~ 18352726 (-) True AMCG00007423
AMCG00007421 mRNA upstream 29266 18359142 ~ 18361385 (-) True AMCG00007421
AMCG00007430 mRNA upstream 32378 18362254 ~ 18397041 (-) True AMCG00007430
AMCG00007429 mRNA upstream 74345 18404221 ~ 18416448 (-) True AMCG00007429
TU29633 other downstream 261019 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1698063 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1997317 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1997317 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4373903 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 446484 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1585270 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2001637 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2141235 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5641795 23971671 ~ 23972665 (-) True G25026

Expression Profile