RNA id: AMCG00007425


Basic Information

Item Value
RNA id AMCG00007425
length 903
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00007425
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18343023 ~ 18346193 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgagggaggagagagaaaacaacaacacgtCAAATGTGcaactgacacactcacacactgacactcacataCCCACTCACACAGGGGAGCGCCCTTCCCTTGGTGGGGTGCTGACAGCTAGGACAGGGAGGCAGTGGGTGGGCTTCCCGTTTGTGGAGGGGGTGGCACACGTCGAGTCCAGCGTACCTTTAGTGGGCTGTGGGGTGGGGACAGTAAAGGGCGGCCTAGTCTTATTACAAAGTACCGTGCTGTTCTCCTCCCCCTTCATGTCTGCCCTTTCCATGCCACATGGACCGCACCCCCGCGCTCTCCTCCACACACAGTTGCGGCTGCTCCAGGGTGCTCCTCCCACAGGGGTCAGCGCCAGCCTTTTGGACTTCCTGTTGGAAGCTGCTTTGGCAAATGTTCAGGCTTGCCCTCCAAACCCtggccgccccccccaccccggtgACCCAGGTGACCGGCGGCTCAGCGCAAGGTGTTTACACCGCAGTCACCCGCCTGCCCCCTGTAAGGCTCTGGATACAATGAGTAACCGGCAAGTTTCTCTCCTGGTTATGGTTCCTGTGATTGTTTCCGAGATCGTTGGGTCCTGCTGTGTGCCAAGATGCTTGGGTCAGAAGGGGGTCAATTATTACAACACTGTGATGGAGCAGCAGGCTGACGGGCAGCTCACCGAGCCCCTGCAGATCTTCCCCAGAGcgCCCTGCATGCCCTGGCCGGCTCAGAGCTCTGCATCGCACAGAGTTAATTACACATTCGGGGGAAGCCTGTCAGTCAGGACGGCGCACTCCGGTTACACTGCACACAAAGGCACATTCACAGAGACGCCCCGAGTCCCCGGCTTCAAAGACCCGACTCTGAGGACAGGGTGTCTGCCACCGTGTAATCCTGCACTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 139117 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 269018 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 280031 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 436615 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 519705 17821767 ~ 17823318 (-) True G23624
TU29805 lncRNA upstream 273092 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 365884 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 431652 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 432978 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 434644 18780837 ~ 18781092 (-) True G23842
AMCG00007424 mRNA downstream 13147 18319968 ~ 18329876 (-) True AMCG00007424
AMCG00007426 mRNA downstream 32655 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007427 mRNA downstream 38705 18300855 ~ 18304318 (-) True AMCG00007427
AMCG00007422 mRNA downstream 48453 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007420 mRNA downstream 67772 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007423 mRNA upstream 1961 18348154 ~ 18352726 (-) True AMCG00007423
AMCG00007421 mRNA upstream 12949 18359142 ~ 18361385 (-) True AMCG00007421
AMCG00007430 mRNA upstream 16061 18362254 ~ 18397041 (-) True AMCG00007430
AMCG00007429 mRNA upstream 58028 18404221 ~ 18416448 (-) True AMCG00007429
AMCG00007431 mRNA upstream 81204 18427397 ~ 18427606 (-) True AMCG00007431
TU29633 other downstream 284074 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1721118 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2020372 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2020372 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4396958 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 430167 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1568953 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1985320 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2124918 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5625478 23971671 ~ 23972665 (-) True G25026

Expression Profile