RNA id: AMCG00007427


Basic Information

Item Value
RNA id AMCG00007427
length 1029
RNA type mRNA
GC content 0.61
exon number 9
gene id AMCG00007427
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18300855 ~ 18304318 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaaccTATTATTGCGCTGGCTCTGATGGGAGAGAGATTTTCCAGCTGTAATCCTGCTCCATTTTGCACAGTAGCGGAGGAAGGCGGTAGCggcagggggaggaggaggcagagttgTCGCACCCCAGTGGACACAGCGGGGCTGCGGCGCTCCTCTGGGATCAGAGACGGAAATAAAGACGGGAATACTCAGCCAGAGAGCCAGGCGGCCCAGAGCGAGCCGGGCTTCTCACCACCAGCTTCTTCTCGCATTGAAAGCTGGGCCTGTCAGCCCAAGTGCGCCATGAATAATGTTAACTCATTTCGGGGTCTACAGAAGATGAGCACCTCTGTGTGTAGTTACAGTCGGTGTCTGCCTGGCACAAAAGACACGGCCACGGCCGTTCCCTTCCGGCCTGGGAGTGTCCCTGAAGCCGCTCACCCGTGGATGTCGAACGTGACGCAGCCCGCAGTCCAGGCTGCCGGGCACAGGTCTCCCCTCCCCGGTCACAGCAGTAGGGCCATTGATCGGCCCGGCGGTGTGCGACTGAGTCTGCAGCAAGGGGGGGGCGGCCAGCTCAATGGCTTCTTGTTTAAGGTGTGGGGAGGAGAGCTGCGGTGTGGACAGGGGGCTGAAAGATGCGACCCCACCAGGGAGCACCGGGGAATGTTGCCGGGGGGGGCCAGAGCCCTGGGCTGCGGCTCTGTCAGCACCCGGCTCGCCTGGGCCCAGAGACGCTCTTTCAGCCTGGCCTCTTTCAAATATTCTTCTGAGGCCGGCCAGCCAGTCCCTGCATCGACCAATCCCTCAAATAACACAGCCAGCTGGGCCCGGCCCTCTGGTGTTCTCTGTCTCGCCTCCGCTGAGGGGAGATTGCTGGAGCTAGGGGGCAATtCTCCAGTCACCTCTGTTTCCTCTGGCAGGCTCAGTAGCTCCGTGGCTCCCTCAGACATGCGGGGAGCCTGGTCTCGGCCCTTCTGTGATCCTCCTGTGCTTCCTGAGGGAGAATTCAGTGATGTGTTCGTTCACTTCATCACTCAGTGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29680 lncRNA downstream 96949 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 226850 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 237863 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 394447 17906101 ~ 17906408 (-) True G23629
TU29587 lncRNA downstream 477537 17821767 ~ 17823318 (-) True G23624
TU29732 lncRNA upstream 9833 18314151 ~ 18403277 (-) True G23745
TU29805 lncRNA upstream 314967 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 407759 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 473527 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 474853 18779171 ~ 18779608 (-) True G23840
AMCG00007422 mRNA downstream 6285 18290092 ~ 18294570 (-) True AMCG00007422
AMCG00007420 mRNA downstream 25604 18265414 ~ 18275251 (-) True AMCG00007420
AMCG00007419 mRNA downstream 63547 18224331 ~ 18237308 (-) True AMCG00007419
AMCG00007418 mRNA downstream 92835 18203001 ~ 18208020 (-) True AMCG00007418
AMCG00007413 mRNA downstream 185096 18113775 ~ 18115759 (-) True AMCG00007413
AMCG00007426 mRNA upstream 2559 18306877 ~ 18310368 (-) True AMCG00007426
AMCG00007424 mRNA upstream 15650 18319968 ~ 18329876 (-) True AMCG00007424
AMCG00007425 mRNA upstream 38705 18343023 ~ 18346193 (-) True AMCG00007425
AMCG00007423 mRNA upstream 43836 18348154 ~ 18352726 (-) True AMCG00007423
AMCG00007421 mRNA upstream 54824 18359142 ~ 18361385 (-) True AMCG00007421
TU29633 other downstream 241906 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1678950 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 1978204 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 1978204 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4354790 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 472042 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1610828 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 2027195 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 2166793 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5667353 23971671 ~ 23972665 (-) True G25026

Expression Profile