RNA id: TU29768


Basic Information

Item Value
RNA id TU29768
length 1633
RNA type TUCP
GC content 0.54
exon number 4
gene id AMCG00007433
representative False

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18567242 ~ 18570472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTGGTCCTTGCCGGAGAAGACTTGCACGTAGCTGCGGACTGTGCTTGCCTGCTCGCCGGTGTGCGCGCCTGGGTTCACACGGTCAATGTCCATCAGCCGCCCGTTCACAGTGCCATGCTGTCCGGGTCTGCCGGGCGGTGATCTCTGCTGGCCTGCAAACACGAAGCGACAGAAGCCCGGACTGAGACCCAGCATGCAGGCTGCTGCCGCCCGCACTGCCGCTTCATAGACACTGCGCTGTGCTCAGGGCCCGGCCTGCCCCTCGGGCCGCCCGGGAGATACCCGACCGCTGCTGGGAGGGATGCTACAGAGTCCTTGCTGTGACCATGCTGAGTCGCCTGCAGGAGctgaagaaggaggaggagacgCTGCTGAAGATCAAGGCCATGCTGCAGGACCAGCTCAATAGGCTGAAGGTGGAGGAGCTGGCCCTCAGGTCGATGATTAGCACAGAGCGGGAGGACAGCCCGGCACAGCccccggtcactgagaccACTGGGCAGCTGGACGATGAGCAAATCATTAATCAGATGGAGCTGCAACTGAGTGCTACCATGGACCAGGAGatggaggaagaagaggaggaggaggaggatgaggaggaagaaGGGGAGGAGTACTGACCCACCAGTTCCTCGGGCTGACTTGTGACCCACTGCAGCACAGATCTGCAGGCCTGACACAACCCCGTCCTTCCTGCTGTTACTCCCAATTCGAGTCTTGCACATCAGGAACAAAACttatctgtatatgtgtatatatttatctgcactattttgtgcatctgtttgtttttttgtgttttgctgttttcaATCTTTCCGATTGCTCTGCTGCTAAGGCACAATGTTATTCCTTCTCCTGGGGGCTGCAGGAGACCGGTACTGCACAGGGCCCGTCTCCACCTCGAGTCTTTTATAAATGTTCCCCGTAGgaaaaaagcacattaaagTGTAGTAAAGTGCAGTTAAAAATGTTACTGTGGTGTGGTTACAGCCAGACCGTGATGCAAGGCATTGGAGGCCTGGTATAAGCACAGTAAAAGCATATGAACACAGCATTGCCATACAACTTGGCAATGGTAAATATTCAGCAGGGCTGAGACAGAGTTGTTTTCATGGGGGGGCAGTGgagggttttctttttctgtgcatGTCAGTCGCAGCATGAAAAGAGTAGCCACCGCATGCGTAACCTGCCAGGTGTGGgtagtgagtgagtgagtgagtttgtgtgtgtttctttctgttgttgttttcttgttttatatgATAGTTTCATTTTATGCTGCCTGGAAACCGGTGCGAGTCCCCAGCTGTccctgcacacagagagagaggactcGCAGCCCAGACCTTTCTTTCGTGATATGGtactccacccccccaccccccgcaaTGTTCTGTGATACTATTTGAACCCCTTATCCCCCACTGTTTGAGAGGCAATTTCCCACGAGTGTTTTTCAGTGCAGCCCTCTGCCGTTATCGCTGAAATCAGGAGGGCCGGGCCCGTGTGGCGGGGggctgtgtgcttgtgtgacTGGAGCCTTGGACCGCTGCAGAGCAGCGTTACGTGCGTTACGTTctcactgtacatacaataAAGGATGGTggggacaacaacaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29687 lncRNA upstream 342833 18222183 ~ 18224936 (+) False AMCG00007414
TU29673 lncRNA upstream 363408 18202462 ~ 18204361 (+) True G23696
TU29613 lncRNA upstream 504865 18050143 ~ 18062904 (+) True G23642
TU29602 lncRNA upstream 614494 17952551 ~ 17953275 (+) True G23634
TU29598 lncRNA upstream 624659 17942776 ~ 17943110 (+) True G23631
TU29781 lncRNA downstream 15710 18586174 ~ 18586536 (+) True G23780
TU29782 lncRNA downstream 17552 18588016 ~ 18588690 (+) True G23781
TU29783 lncRNA downstream 18402 18588866 ~ 18589068 (+) True G23782
TU29795 lncRNA downstream 53457 18623921 ~ 18625059 (+) True G23791
TU29811 lncRNA downstream 144207 18714671 ~ 18719794 (+) True G23804
AMCG00007428 mRNA upstream 165270 18397347 ~ 18402499 (+) True AMCG00007428
AMCG00007414 mRNA upstream 344184 18217730 ~ 18223585 (+) True AMCG00007414
AMCG00007415 mRNA upstream 350874 18209628 ~ 18216895 (+) True AMCG00007415
AMCG00007417 mRNA upstream 366434 18198618 ~ 18201335 (+) False AMCG00007417
AMCG00007416 mRNA upstream 369243 18168450 ~ 18198526 (+) True AMCG00007416
AMCG00007437 mRNA downstream 5378 18575842 ~ 18584276 (+) True AMCG00007437
AMCG00007438 mRNA downstream 20216 18590680 ~ 18596353 (+) True AMCG00007438
AMCG00007436 mRNA downstream 48844 18619308 ~ 18621844 (+) True AMCG00007436
AMCG00007440 mRNA downstream 51408 18621872 ~ 18623043 (+) True AMCG00007440
AMCG00007439 mRNA downstream 85102 18655566 ~ 18673142 (+) True AMCG00007439
TU29705 other upstream 275431 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 359461 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 365809 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3279809 15286497 ~ 15287960 (+) False AMCG00007352
TU28829 other upstream 4078077 14478673 ~ 14489692 (+) True AMCG00007337
TU29920 other downstream 480878 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2489937 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3711236 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4618996 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5621757 24192221 ~ 24194481 (+) True AMCG00007631

Expression Profile