RNA id: AMCG00007441


Basic Information

Item Value
RNA id AMCG00007441
length 1074
RNA type mRNA
GC content 0.59
exon number 9
gene id AMCG00007441
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18597275 ~ 18613946 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGAAGAGCAGAAGAAAACCAGAACCGATCCAGCTGAACAAGACTCCGGATGGCAGCACCATCAACGGTACCAGCGCCACGGAGACGAATCTGGAGGCCCTGCAGAAgaagctggaggagctggagctggacgAGCAGCAGAGGAAGCGTCTGGAGGCCTTCCTCACGCAGAAGCAGAAGGTGGGCGAGCTGAAGGACGATGACTTCGAGAAGATCTGCGAGCTGGGTGCCGGCAACGGGGGCGTGGTCTTCAAGGTGTCGCACCGCCCCTCTGGCCTCATCATGGCCAGGAAGCTGATCCACCTGGAGATCAAGCCGGCCATCAGGAACCAGATCATCCGGGAGCTGCAGGTTCTGCACGAGTGTAACTCCCCGTACATCGTGGGCTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGCATCTGCATGGAGCACATGGATGGGGGCTCCCTGGACCAGGTGCTGAAGAAGGCTGGCAAGATCCCAGAGCAGGTCCTGGGGAAAGTCAGCATTGCGCCATCCAACATCCTGGTGAACTCGCGCGGGGAGATCAAGCTGTGTGACTTTGGCGTGAGCGGCCAGCTCATCGACTCCATGGCCAACTCCTTTGTGGGCACGCGCTCCTACATGTCTccgGAGCGTCTGCAGGGCACGCACTACTCTGTCCAGTCTGATATCTGGAGTATGGGCCTGTCCCTGGTGGAGATGGCGATTGGTCGCTACCCTATTCCACCTCCAGATGCTaaggagctggagcagatcTTCGGCTGCCCTGTAGCAGGCGACGTGTCCTACAGCGAGGCCAATCCCAAACCCCGGCCCCCTGGTCGCTCAGTCGGCTCGTACGGCCCGGACAGCAGAGCCCCCATGGCGATATTTGAGCTGCTGGACTACATTGTGAATGAGCCTCCTCCAAAGCTGCCAGCTATCTTTGGCTTTGAGTTTCAAGACTTCGTACACACCTTCATCAAGCAATCCGAGGCAGAGGAGGTGGACTTTGCAGGCTGGCTGTGCAGCACCATTGACCTGAACCAACCCAGCACGCCCACCCACAGTGGAGGAGTGTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29732 lncRNA downstream 193998 18314151 ~ 18403277 (-) True G23745
TU29680 lncRNA downstream 393369 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 523270 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 534283 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 690867 17906101 ~ 17906408 (-) True G23629
TU29805 lncRNA upstream 5339 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 98131 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 163899 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 165225 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 166891 18780837 ~ 18781092 (-) True G23842
AMCG00007443 mRNA downstream 7148 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007435 mRNA downstream 24155 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007434 mRNA downstream 93884 18496190 ~ 18503391 (-) True AMCG00007434
AMCG00007432 mRNA downstream 114745 18475150 ~ 18482530 (-) True AMCG00007432
AMCG00007431 mRNA downstream 169669 18427397 ~ 18427606 (-) True AMCG00007431
AMCG00007442 mRNA upstream 10777 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007445 mRNA upstream 100669 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007449 mRNA upstream 177632 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007448 mRNA upstream 201905 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007457 mRNA upstream 406774 19020720 ~ 19023092 (-) True AMCG00007457
TU29633 other downstream 538326 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1975370 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2274624 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2274624 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4651210 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 162414 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1301200 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1717567 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1857165 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5357725 23971671 ~ 23972665 (-) True G25026

Expression Profile