RNA id: AMCG00007443


Basic Information

Item Value
RNA id AMCG00007443
length 1683
RNA type mRNA
GC content 0.57
exon number 18
gene id AMCG00007443
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18584799 ~ 18590127 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAACGAAGATTATCAACGACACGAAGAAGTTCCTGAAGTGTCTGTGGGACTACCAAGAGGACAGTAAAAGCTCGAAGGCCGCCGTGGGTTATGAGGATGACATCGAGATCCAGATGGTAGACAAAGCCAGTGGGAATCCTCTGCAGGGCATCTGGACTGGACACCTGCCTGTCCTCGTCTGCCAGAAAGCTgTTCCCAAGCATGATGTTGAAGAGGAGACCGCGGAGGACTCTCTGCCTGGGGAGCCACTGCTTCACTCGGAGGAGGCGGGGCCCTTGCCTCTGTCTGTAATGAAGGCCAGGCAGCTGGTTTCCTGGTACTGCATGGCACAGAACCCCAACATGCCACAGTGGGCGAGCTGGGCCGGCCAGGGTGTGGCGCTGTACCCGCTCTGGGTGCGCTGTGACATGTCTGACCCCGAGGGCACCGGCTGGCTGGGCGCTGACACCGTCCGGACCGGTGGCAAGGTCACCGCAGTCAATCTGCACACGGTCACCTGCAAAGGTCCTGCCGTGGGAAAGTCATCCCATGTCACCATGGAGGAGCTGACTCGGGCCCACAAGAGCAGACATCACACTTCCGCTGTGACAACAAGAGGTTGTGCACAGTTTGACCTGTTCGGCTCCACGGTGGTGGAGAACACAGTGATTGAGTCCCAGAGCAGCGTGACCGTGGACTTCACCTGGAGCAGCGTGGAGAGCATCCTGCAGACACCGCCCCTGGCCTCCACTGCCACTCTGAACATCAAGATTGCCAGTGGAGACATGCGGAGCCCAGTGTATCAACTGTTCAAGGAATTGGAGTTTATCCAGGTGTTGGACGATGGTTTGAGGACGGGTGTGACAGAATGGCCAGAGCCTGTGGAAACCAAGTCGGCTCTGGAGCTCACCCAAGCTCTGATAGAGGACCTAAAGAATAAAGTGAGAGCTGTACAGAATCAGCCTGTGAAAGAGAGTGAGAGGGGAGACCTGGACTTCACGGAGCAGCTGTGGTCCAAAATGAGGACGAGCGTGACCTCCTATCAAGACATTGTGGATTGCCTGACGCTGATCCACAGGGGCAGCAGCAGCGCCCTCAGTAAGCTGGTCCTGCGGTCCTACCAGGGCCAGATGGGCTTGGTGTCGCTCACCGGCCTGGCGCCCATCCACATGCTGCTGGAGGTGGGCCTGGACAAGATGCGCAAGGACTACATCAACTACTTCATAGGTCAGGAACTTACAACGCTTAATTACCTGGCATACTACCTCAGCACCGAGGTGGACCTGCAGGAGCAAGTGCAGCGTGTGAAGAAACTGCACCACCTGCTGGAGATAGTGGTGAACTGCAGTGCCTTCCTCAGCCTGACACACGAACACCTCTTCCCACTGACACAGTCTTGTCTGCAGTTTTACAAGTCGCACCCTTATGATGAAGAGCACCAGTTCCAGCTGCAGATCCGGCCCAGTGTCATCAGCAGCTTCTATCAGAATGAGCACCCCCAGACCTGGAGAGTGGAGGTGTCCAGTGGTCACGGGCACCGGGAGCTGAAGACCTGCTGGCAGCTCAGCGACAAGCCTCCTGTGGACCATGTGTCCTTCAGCTTGGCAGATTTCCCCCTCGAGGTTACCATGAATGGAGAGAAGGAGGAACCGGCGTACTTCACTCTGGTGAGCAGCTGCAGCCAGATCAGTTTTACCTGA

Function

GO: NA

KEGG:

id description
K11579 ZWILCH; protein zwilch

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29732 lncRNA downstream 181522 18314151 ~ 18403277 (-) True G23745
TU29680 lncRNA downstream 380893 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 510794 18072055 ~ 18074005 (-) True G23676
TU29637 lncRNA downstream 521807 17972906 ~ 18062992 (-) True G23663
TU29596 lncRNA downstream 678391 17906101 ~ 17906408 (-) True G23629
TU29805 lncRNA upstream 29158 18619285 ~ 18620731 (-) True G23799
TU29820 lncRNA upstream 121950 18712077 ~ 18714368 (-) True G23813
TU29847 lncRNA upstream 187718 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 189044 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 190710 18780837 ~ 18781092 (-) True G23842
AMCG00007435 mRNA downstream 11679 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007434 mRNA downstream 81408 18496190 ~ 18503391 (-) True AMCG00007434
AMCG00007432 mRNA downstream 102269 18475150 ~ 18482530 (-) True AMCG00007432
AMCG00007431 mRNA downstream 157193 18427397 ~ 18427606 (-) True AMCG00007431
AMCG00007429 mRNA downstream 168351 18404221 ~ 18416448 (-) True AMCG00007429
AMCG00007441 mRNA upstream 7148 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007442 mRNA upstream 34596 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007445 mRNA upstream 124488 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007449 mRNA upstream 201451 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007448 mRNA upstream 225724 18815851 ~ 18823606 (-) True AMCG00007448
TU29633 other downstream 525850 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 1962894 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2262148 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2262148 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4638734 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 186233 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1325019 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1741386 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1880984 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5381544 23971671 ~ 23972665 (-) True G25026

Expression Profile