RNA id: AMCG00007445


Basic Information

Item Value
RNA id AMCG00007445
length 3000
RNA type mRNA
GC content 0.49
exon number 7
gene id AMCG00007445
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18714615 ~ 18733019 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACAGGCCCGGGCTCAGCCGCAGCTGCATCGTCCTGGATGAAAGATCGGCGGGGCCGTACAGTGCTCCCCCCCCCGCGAAAGATGCGTTTCTGAAGCGTGTGTTTGACCCCGCCGTGACCCCGGAAGTGCAGAAGGGCGCTGCGCGGCCGCTCATTGACTCGGCGGACTTCACGGCGGCGCTGATTACCGGCCTCTTCTGCGGGAAGATGGGGACCAGAGACGACGAGTATGACTATCTGTTTAAAGtggttCTGATTGGGGACTCAGGGGTGGGGAAGAGCAACCTACTCTCCCGCTTCACCCGAAACGAGTTCAACCTGGAAAGCAAGAGCACCATTGGCGTGGAGTTCGCCACGCGCAGCATCCAGGTGGACGGCAAGACGGTGAAGGCGCAGATCTGGGACACAGCCGGGCAGGAGCGCTACCGGGCCATCACCTCCGCTGCAGACAGAATTACTGCGCAGAAAATCAACGCACAGTGTACGGCTGAGAAGAACGGTTTGTCTTTCATAGAGACCTCCGCCCTTGACTCCACCAACGTGGAGACAGCCTTCCAGACCATCCTGACAGAAATCTACCGCATCGTGTCTCAGAAGCAGATGTCAGACCGGCGGGAGAACGACATGTCTCCCAGCAACAACGTCGTGCCCATTCACGTGCCGCCCACTACTGAGAACAAGCCCAAGATGCAGTGCTGCCAGAACATCTAGCGGCTGCCCCGCCCACCCCTGCCCCGCCCAACCCAGTATAGTGTCCCCTATCTCCCTCCCCTATAAAAGCCTACTGTGGCGGGCAGGCAGGTGGGCAGCCAGGGCACCGGGCTGGAGCGCCGAGAAGAGGCTACAGCATCCCCAGAAGCGGAGCGTCACCATGACACAACAGCTGTGCTTGTCTGCCATGGTAGACTTTTATATGGGATACCCTTAATTTTAATAATCAGATCTGAGGATCTCAatagaaatgtcttaaaatatgattttttatttttttatttttcagttcattttaccttattgtattttattttgaactgcatatatcatatttgttattatatttaatatatatgtatacaatctATAtactaggcctatatatatatatataatatacactgtgtgtgtgtgtatgtatatgtgtatatatatatatatatatatacacacacacacatacatatataagcatattcatatatattttgaggAGACACTCTCTACACCTCCCACCACTCAGTGCCTGTGTCACCCCATTGTGTCAGTGTGGCGCCAGGGGCTCAGCTGTGAAAATTGACACCGACCGTAAGATCTGTCTGTGTATCGCATGGCATAAGAAGACAATGGCACCATGTGACTCGCTACTGAAAGATACATGACGTGCCATGACAGTAGCAGAGGGGACTGTTCGTTCATTGTttagttcttgttttttaatggagCGCCTACCCTATTGTCCTGTTGTGGCTGTTACAGAGGTGTTGTCACTTTGTAAACGCAGCAGCCATGCTATGCAGGCTGATGCATAGACACGGCACAGGGGTGCTGGGAGTGGTGCACTGAAGCGGTCTGCATGGTGGCCTGACCCCTGGGGGAGGCTCTGTCCGTCTCTGGGACCAGATCGCAGTTCAGCTCATGAATACTGCATGGATAGCTTCGGTCACCGTTTGGTCATAGCTTCAGAgctgctgtgctgctgagatACAGGGAGGTAGAAGCGCTGCTGCTTTGCAGGAGCTGGGCAAAAGGTTACAGAGGCTCACACAATTAACAGAAAGGTGAAGCCGCTCCCCTCAGCTCAGCCCATCTGCTGCCAGTGTCTCCTGGGCGTGCTCTCTGCTGCTTTCCAGACAGGGCAAAAGAAACCATGCCTGACAACtggcaaaatgtattaaagactTAAAGTTGATTGCTTTGCTACCACGTAGTGCCTAGTTTAAAACTGAACAGGTCAGTATTGattcacattcatttattacattatttaaacatacaattacccatttataccactgggtttgtactggagcaatctaggcaCAGTGCCTTGCTCATGGGTCCcacacctgggactgaaccctcTGCTCAGGACCAGAGCACTGACCATGACTCCACACTGCTGTATagtgattatgattatgatcatATGATCACTGAGTGATGGGAGTTCCTGTGACTACAGGGAGGGATTGAGGTCCAGGCCAGGCTGGGAGGACCTCCTGCAGCACTGGCAGGGGGTGGATTGTGTTGTCAAACGAGCAATCACAAGTGACTTAAGAGCTGCTTCAGCACATCTGTCATACAGAGACACTGTTTTAACGCCCAGTCCTCTGCATTATAAGGAGAGAGGCCACAGGTGCAGCTGTGAGGCTAGTATAAACTCTCCTGCAGCGTGGGGGGGTGTGCAGCACTGCAGTTCAGCTCCTGCCCATGGAGTGACTGGAGTGTTGCTGGACGGCGGGGCctgtccgtctgtctctgtgtcttgaATGCGTCCGTCAGTCTGTCTGGCCTGCAGTGCTTATGACGTGTGGAAACGGAGGGCACTGCCACTGCCTGCTGCTCAGCCGGCTCTGCAGAAAGACAGTTTCACGAGTGTCTTCTTGGTGCATTCGTTCGTTTAGTTTATTTGCTTCTGTTGTTGTGTTGAATCTGTTTATACATTACCATCCCTGCCtctcaccccccctcccccctaaTTCCATATGTAGTTTTTGCATGTGCTGGTGATTCTcattcctgttgttgtttttaaaaatattatgattTTGAAATACTGTATTCTGTGCACAtgaattgaaatggaaaacaaaacaaaccaataaacagGAATGGGGAAGTATGATTCGAGAGCCAGTGAGCGGTGCCTGGGTGCTACTGCACATCGTTGATTTACTGCAATTTCTTTCTGTCCTGAGAAGAGGGTTTCATATACTGAGCTGGTCCAATTAAGTGattggttaataataataaaaaataacttaattggTTCAGTTTACA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0055037 recycling endosome cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07904 RAB11A; Ras-related protein Rab-11A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29820 lncRNA downstream 247 18712077 ~ 18714368 (-) True G23813
TU29805 lncRNA downstream 93884 18619285 ~ 18620731 (-) True G23799
TU29732 lncRNA downstream 311338 18314151 ~ 18403277 (-) True G23745
TU29680 lncRNA downstream 510709 18202459 ~ 18203906 (-) False AMCG00007418
TU29651 lncRNA downstream 640610 18072055 ~ 18074005 (-) True G23676
TU29847 lncRNA upstream 44826 18777845 ~ 18778069 (-) True G23839
TU29848 lncRNA upstream 46152 18779171 ~ 18779608 (-) True G23840
TU29850 lncRNA upstream 47818 18780837 ~ 18781092 (-) True G23842
TU29851 lncRNA upstream 48195 18781214 ~ 18785137 (-) True G23843
TU29867 lncRNA upstream 96846 18829865 ~ 18830087 (-) True G23854
AMCG00007442 mRNA downstream 80646 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 100669 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007443 mRNA downstream 124488 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007435 mRNA downstream 141495 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007434 mRNA downstream 211224 18496190 ~ 18503391 (-) True AMCG00007434
AMCG00007449 mRNA upstream 58559 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007448 mRNA upstream 82832 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007457 mRNA upstream 287701 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 290879 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 317053 19050072 ~ 19056271 (-) True AMCG00007454
TU29633 other downstream 655666 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2092710 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2391964 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2391964 16321037 ~ 16322651 (-) False AMCG00007365
TU28749 other downstream 4768550 13945643 ~ 13946065 (-) True G22931
TU29846 other upstream 43341 18776360 ~ 18777638 (-) True G23838
TU30203 other upstream 1182127 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1598494 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1738092 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5238652 23971671 ~ 23972665 (-) True G25026

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_01451280_01460210.mRNA True 2083 mRNA 0.39 5 CI01000075 1451280 ~ 1461636 (+)