RNA id: AMCG00007448


Basic Information

Item Value
RNA id AMCG00007448
length 2692
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00007448
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18815851 ~ 18823606 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGAAGTCGGGCGCCTGCGTGTGATCTGGGAGCCCATTGATTTTGAAAAGCTGCTACAATAAACCCCGCACTACACGTCCAGGAGCCGCAGCCCCCCGCCATGCAGCCCCCCGCCACGCAGACCCCCGCCACGCAGACCCTCACCCCGCACGTGTACTGGGCGCAGAGGCACGAGGACGTCTACCTGCGCGTGGAGCTCAGCGATGCGCAGAATCTGGACATCAGCATTCTCGACAACATCCTGCACTTCAGAGGTCAGGGCCACGGAGCCAAAGGGGACAATGAATACGAGTTCAGCTTGGAGTTCCTGTGGCCAGTGAAGCCAGAGGTGCAGTACAAGTCGACGCAGAGGCAGGTGAATATCTCCGTGCGGAAGCAGGAGCACGGCTGGTGGGACAGACTGACACGGCAGGACAGGAGGCCGCTGTTCCTCGCCCCTGACTTCGACCGCTGGCTGGACGACGTTCAGCAGCCTGAAGAGGGGCTATCTGTTCATGTACAACCTGGTGCAGTTCCTGGGCTTCTCCTGGATCTTTGTCAACATGACCATTCCTTCTACGACACCTTCCACACCATCGCAGACATGATGTATTTCTGTCAGATCCTGGCAGTCGTGGAGGTGGTCAATCCGGCCATCGGGCTGGTCAAGACTGGGGTCATCCCGGCCATGATCCAGGTGGTGGGGAGGAACGTCATTCTGTTTGTGATCTTCGGGAGCCTGGAGGACATGCAGAACAAAGCGGTGGTGTTCTTCGTGTTTTACCTGTGGAGCATCATCGAGATCTTCAGGTACCCGTACTACATGTTGGCCTGCATCGACACAGAGTGGAAGACACTCACCTGGCTCAGGTACACGATCTGGATGCCGCTGTATCCTCTGGGTGTCCTGGCAGAAGCGGTGGCAGTGATCCAGTCCCTGCACATATTCGACAAGACTGGTCTGTACAGCCTGCCTCTGCCACGGGCCCTGGGCAGCTCCCTCAGCTTCTCCTACAGCTTGCAGCTCTACCTGGTGCTCATGTTCctggGCCTGTTTGTGAACTTCCGGCACCTCTACAAGCAGAGGAGGAGACGATTCCGGACCAAGAAGAGGAAGGCCCAGTAAGCCGCCTGCGGCCCCGCCCTGGTCGCTGGGTCCCAGCGGCCACCTCTCCGGCTGCCTTCTCCACTACTACTGTACCACGTCCTGCGCATTGCGGGCCCCCGCCACAGCCCCGGCCCTCTCAGCCGGGACCAAGTGCATTCCTCCTTATTTTCAACCGACTTGTCTTTGCATGATGATCATGAATATTGAAAACTACACGCAATGCAGAAACACTCGTAGGTTTCTTTCCCCGCGCAGAGAGagtagtgttttttgttgttgtttgttttgtatcctGCCAACAACAGGCTTCTCTctttctgacacacacagcctgtccatctccctcctctcctgtctTGTCTGTTGATCTGATCTGTCCTCCACGAACCTCCCCTCCTGGGGCTGCTGCCAGTGTCTGAGGTGACCCACCACCCAAAATCATTAGCGCATCTCAGTGTGGCACTTCTACAAGTCTGCTTCCTGTAAttgggacatttaaaaatagactggataggatccttggaccacttagttattaatggaaaccaaacgagcacgatgggtcgaatggcctcctctcatttgtaaactttcttatgttcttcagCTGCAGACCACGCAATAAGCAGACCAGACAGTGCTACTGAACCAGCTCTGCATTGCCCTGTAGTCAACGCTCTGGGGCCAATTAGTCCTTAATCGCAGTGCATTTAGTTGCCCTGACTACTGTTAAGAGaggtaaaatgttatttgtattaaggTCTGATAGTAGCATCATGTGACGCTCGATCCAGACACCAAGACCATCTCCTTCGGTTGGATACCACAGACATGAGGACTGGCCTTCCCAGTGCCACTCAGTTTAGATGTCACATTGACAGTAAGAAGCAGGCAGTAGTGTCTGGCACATCATTACTGCGTTCTGGAAGGGGAATCCTTTCAGCCTTCATAGCCAGAGGAGCCGCAACTCACAAGCCCACACATGATCTTATTTGTCTAACCCCGCATTAATGTAGATggcttgttttagttttttttttaatgtaagaagAGATCAGTGGAAGCAGAGATCAATCTCAGTAGATATGATCACTTTGAAATGCTCAAGCAGGATCAAAATGATATAGTAACGAATGAATTAAAAGGCCTGTAGATTTACTGTATTAGCAAGATGAGTGTGTATTGCAAGGATCGTTTGAGGGGCATTGCAGGGCAGGAGCATGACCTCGCCAAGAACCAGCAGGACCTCTGCCAGCCAGAGCTGCACGTCCCCCTCCTGCAGGGCCACCGTGTCTCCTGGCTCTCCGTTCACCCTGAGCTCCTCCACAAACTAGGGACCGCCCTGCAGAAGACCCAGTGACCCTGCCCGAGCGCAGCAGTGCCACCCTGCTCTACAGAACTTGATCCCACACTTTGGTTTCATACTGTCACCCACCCTGAATGTATCACTGTAGCAACAGGACAGCAGGAACCTCAGGGAaagtggactttttttttttttaatccaacaCACTGGAAACGTGTCTAGTATTGAGGACAGTGTTAGAATGGCACAATCTTAAGTCTGgtattgaaagcaaaaaagtaataaagatttaaaaacac

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016829 lyase activity molecular_function

KEGG:

id description
K10703 HACD, PHS1, PAS2; very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29851 lncRNA downstream 30714 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 34759 18780837 ~ 18781092 (-) True G23842
TU29848 lncRNA downstream 36243 18779171 ~ 18779608 (-) True G23840
TU29847 lncRNA downstream 37782 18777845 ~ 18778069 (-) True G23839
TU29820 lncRNA downstream 101483 18712077 ~ 18714368 (-) True G23813
TU29867 lncRNA upstream 6259 18829865 ~ 18830087 (-) True G23854
TU29883 lncRNA upstream 43161 18866767 ~ 18867479 (-) True G23867
TU29891 lncRNA upstream 77759 18901365 ~ 18901597 (-) True G23875
TU30035 lncRNA upstream 656408 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 756175 19579781 ~ 19579984 (-) True G24003
AMCG00007449 mRNA downstream 5280 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007445 mRNA downstream 82832 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007442 mRNA downstream 181882 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 201905 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007443 mRNA downstream 225724 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007457 mRNA upstream 197114 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 200292 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 226466 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007456 mRNA upstream 234651 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007462 mRNA upstream 263596 19087202 ~ 19101380 (-) True AMCG00007462
TU29846 other downstream 38213 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 756902 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2193946 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2493200 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 1091540 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1507907 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1647505 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5148065 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5442218 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile