RNA id: AMCG00007449


Basic Information

Item Value
RNA id AMCG00007449
length 2385
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00007449
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 18791578 ~ 18810571 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATGGTTCAGTGAAGGTCGACTCCATAAAGCTGTCTGCAGGTGTGGTGCTGATCCACGGAGCGGATGTCTTGCGCGGCGTCCTGTCGCTGAGTGGGCAGCGTTTATCCGCCGCTCTGACCGCAGCGCTGCGCCACTTCGCCTCCCAGCGCGCCGGGGAAGGGCTCTCACTGCCGGCAGAGCGGTCACAGGACGCCCGCTGCGTTGTATGTCCGTCCGTGCCGCCCAGCGGGAATGTGGACCCGGCCTCTGAGGATGAGATGAGAGGAAGCCCTGGGGGAGGGGACAGGGAGGGCGGGGGGATGTATTTGTCCAGGAGAAAGAGGCTGCAGTGGAACCGGATCCTGTTCCTCCTGGTGGGGGTCCTGCTCTGTTGCCTCTACCAGCTGTCCATCAGGAGCCCCTGGGCCTTGGAGCCTTGGCAGGCTGGGGGCACCCTGGGGGTGGAGGGAGACAGTAAGCTGGGGCTGCAGCTCAGGGAGCTTCCCAACCAAACAGAAGTGGAGAACCTGACTGAAACAACGACCCATGCAGCGGTGTCAGCAGCCATGACCACCACCAACCGGACTAATATCAGGCATTGCATTTATGTGGACCCAGAGCCCCGGCCCACTGTGCCAGCCATGCTGAGCCTGCTGCCCAACACCACCACCCCCCAAGCCAACACCACCGTTCCCCCCCATGGCGGAGCACCCCACATGAAGGCGGAGTACCCTCAGGACATCTTCTCAGTGCAGCAAAGGAGGCAGGGCTGGGTGGCACTGCACATCTTCGGCATGATCTACATGTTTGTGTCCCTGGCCATCGTGTGTGATGAGTTCTTCGTGCCCGCACTGGGCGTGATCACCGACAAGCTGGCCATCTCCGACGACGTGGCGGGGGCCACATTCATGGCGGCAGGGGGGTCGGCGCCCGAGCTGTTCACCTCGCTCATCGGCGTCTTCATATCACACAGCAACGTGGGCATCGGCACCATTGTGGGCTCGGCTGTCTTCAACATCCTGTTCGTGATCGGCATGTGTGCGCTGTTCTCCCGCGAGGTCCTACACCTCACCTGGTGGCCGCTGTTCCGGGACGTGTCCTTCTACATCCTGGACCTGATCATGCTCATCGTCTTCTTCCTGGACAACACCATCATGTGGTGGGAGAGCTTGCTGCTGGTGACCGGCTACGCCTCCTACGTGCTCTTCATGAAGTTCAACGTGCAGCTCGAGCGTGCCTTCAAGACACAGCTCAACAAGCACAAGAGCATCGTCAAAGTCATCGCCCTGGAGGAGCCTGAGCAGAGCGACGAGTCACCGGCCACCCAGGCAGCCCTGCCCCCGCCCCCTGAGGACAGAAACAGGCTGAAGCTGCGGCCCACCCTACAGAGAGGAGGCAGCTCGGCCTCGCTGCACAACAGCACCATGCGAAACACCATCTTCCAGCTGATGATCCACACGCTGGACCCGCTGGGGGAAGCGAAGTTTAAGGACAAAGCTGAGATCATGAACAGCATGGCCAGGGGGAAGGCCGAGAGCAAAGGACGAGCAAAATCCGAAGCCATTGATGGCAAGACCGACCTGCCCAACACCGTCAATGTGCAGGTGACCCCCCCCGCTGAGCCATCCACCTCGCAGCCGCCCCCCATCAAGGAGGAGAAGATGCAGACGATGCAGGAGCAGCCTGAGGGGCAGACGGGGGCGGCAGGCTCAGGGGGCTCGGGCAGCAGTGAGGACGATGACAGTGACGATGACGAGGAtagtgaggaagaggaggacgaggacgaggaggaggaggaggaggagagtgaCGAGCCGCTGTCCCTGGAGTGGCCCGAGACTCACCGCAAGCAGGCCACCTACCTGTTCCTGCTGCCCATTGTCTTCCCACTGTGGCTCACAGTCCCCGACGTCCGCAACCCGGCATCAAAAAAGTACTTTGCAATGACCTTCCTGGGCTCCATTGTGTGGATCGCCGTGTTCTCCTACCTGATGGTGTGGTGGGCGCACCAGGAGATAATGGGCCTGACGATCCTGGCAGCAGGTACCTCCATCCCAGACCTCATCACCAGTGTGATCGTTGCGCGGAAGGGCCTGGGTGACATGGCCGTGTCCAGCTCTGTGGGCAGCAACATCTTCGACATCACTGTGGGgCTGCCAGTGCCCTGGCTGCTGTTCTCGATGTTTAACGGGCTGGTACCAGTGCCCGTCAGCAGCAATGGGCTGTTCTGTGCCATCGTGCTCCTCTTCCTCATGCTGCTCTTCGTCATCATCTCCATCGGCGTGTGTAAGTGGAAGATGAACAAGCTGCTGGGCTGCACCATGTTCGGCCTCTACTTCCTGTTCCTGGTGGTGAGCGTCATGCTGGAAGACCGCATCATCGTGTGCCCCGTGTCCATCTGA

Function

GO: NA

KEGG:

id description
K13750 SLC24A2, NCKX2; solute carrier family 24 (sodium/potassium/calcium exchanger), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29851 lncRNA downstream 6441 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 10486 18780837 ~ 18781092 (-) True G23842
TU29848 lncRNA downstream 11970 18779171 ~ 18779608 (-) True G23840
TU29847 lncRNA downstream 13509 18777845 ~ 18778069 (-) True G23839
TU29820 lncRNA downstream 77210 18712077 ~ 18714368 (-) True G23813
TU29867 lncRNA upstream 19294 18829865 ~ 18830087 (-) True G23854
TU29883 lncRNA upstream 56196 18866767 ~ 18867479 (-) True G23867
TU29891 lncRNA upstream 90794 18901365 ~ 18901597 (-) True G23875
TU30035 lncRNA upstream 669443 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 769210 19579781 ~ 19579984 (-) True G24003
AMCG00007445 mRNA downstream 58559 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007442 mRNA downstream 157609 18624723 ~ 18633969 (-) True AMCG00007442
AMCG00007441 mRNA downstream 177632 18597275 ~ 18613946 (-) True AMCG00007441
AMCG00007443 mRNA downstream 201451 18584799 ~ 18590127 (-) True AMCG00007443
AMCG00007435 mRNA downstream 218458 18570568 ~ 18573120 (-) True AMCG00007435
AMCG00007448 mRNA upstream 5280 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007457 mRNA upstream 210149 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007455 mRNA upstream 213327 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007454 mRNA upstream 239501 19050072 ~ 19056271 (-) True AMCG00007454
AMCG00007456 mRNA upstream 247686 19058257 ~ 19074146 (-) True AMCG00007456
TU29846 other downstream 13940 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 732629 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2169673 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2468927 16320997 ~ 16322651 (-) False AMCG00007365
TU29238 other downstream 2468927 16321037 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 1104575 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1520942 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1660540 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 5161100 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5455253 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile