RNA id: AMCG00007453


Basic Information

Item Value
RNA id AMCG00007453
length 3744
RNA type mRNA
GC content 0.58
exon number 9
gene id AMCG00007453
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19032084 ~ 19047759 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAGCGCCATACTTTTACAGCTTTGGCATGGAGGCCAACAGTGAGGCTATTGAGAAGCGCTTAGAGCTGAAAATACCCCTGTTCAACTGCTTCCTGCCCAGCCGACCCCAGGGCTCCCGAGCGCACTATATAAAGAGCAGAGAGTCAGGAGCCAGGCAACTCTGCTGCACAGCGCTCAGAGGACAGCACTACGCACTACACACTGACCACGGATCACGGAGCACATACATACTCAGGAGTCCGGAGTCAGAGCCAGAGCCGGACCCGGGAGACGAGGAGAGTGCGAGCCGGGCTGCACAGCAAAACGAGTGGAGTACCTGGTTCAACGTGGATCACCCTGGGGGTCAGGGTGACTATGAGCAGCTGGATGCCATTCGCTTCTACTATCATGAGCGCGTGTGCGACTCCCCCCGAGCCCTGGAGGCGCGCACCACAGACTGGACCCCGGCCCACAGCACGGGCGAGACAGTGCACTTGGACCCCCGCCGTGGGTTCTGGTGTGTGAATGCAGAGCAGCCCGAAGGGAGGAACTGCTCCAACTACGCAGTCCGGTTCCTCTGCCCCAAAGAGCTGtcccacaaaaaacacaaacacaaaccaacaacaGCCACATTAACCTACAGCTGTTTCCTCCTATCAGCCCCTGGGGCCGCAGCGGAGGGAGTGTGGGGACCATGGTCGGAGTGGAGCCCATGTTCCGCCCAgtgtgggggcactgctgtgcAGATGCGCTCCAGAAACTGCAATTCACACTCCcaccactgggagaaggagtGCATCGGACCCACTGTGGAAGGCAGAATGTGCAAAGGACCATCCTGCACAGtgtgtaaCCTGTCCTGCCCCATGGGCCATGTGAATGCGGAGTGCGAAGCCTGCATGTGTGAGGAGCACCTCCTGCTGGGCACGGTTCGCACTGCGGCTGGTCTGCCTGTCCCTGGGGCCGCACTGCTCAGGGTGGGCAAAACGGCCAAGCTTCTCACCCTGACAGACCACAACGGCCACTTCAGCATCCCAGGGGTCTGTCCCGACGGCAACACCACCCTGAGGGTCAAGCTGGAGAAATACGCCCCTGAGACAGTCACGGTGCCCTCCAGTAATGACAAGGTCTCCGTCATTCATGTCAAGCTGCAGAGGGCAGAGAAGCCCCATGTGCTGAAGAACCCGGAGAGCAAGGCGCGGCGCGAGGGCCAGACAGCCGCCTTCTGCTGCAAGGTGGGGGGACAGCCGGAGCCGGACAACTACCTGTGGTATCATAATGGCACCCTGCTGGACAGAAAGCAGTTCCAGTATGACAGCACCCTGGTACtgaagaaactgaagaaaagcCAGGCGGGCGAGTACCACTGTAAGGCAAGCAACGAAGCTGGGACCATCAAATCCCAGTCTGCTACCCTCACTGTCATTGGGCCTGAGGAGCCTTCCTGTAAACCTGAGCCTGAGTCCCACCTAATCCGCCTGCCTCACGACTGCTACCAAAACTCTAGCAACTCCTTCTTCTACGATGTTGGGAAGTGCCCCACAGGAACATGCACCGGACAGCTGGACAATGGGATCAGGTGCAAGGACACTGTGTCGTACTGCTGTGGGGTGGAGAAGATGGAGCAGAAGCAGATAACCTGCAAGGGCTACACACTGCCCACCATGGTGGTCACCGAGTGTGGCTGCCAGAAGTGCGTCGACACGAAGGTGATCGTGCGCGGGAGGGCAGTGGCAGCAGACAACGGTGAGCCTCTGCGCTTCGGACATGTCTTCATGGGAGGCGTCAGGGTCAGCCGGACAGGCTACAAGGGCACCTTCTCCATCCAGGTACCCTTCGACACAGAGAGGCTGGTCCTCACCTTTGTTGACCACATGAAGAAATTTGTGAACACCACCAAAGTGCTGCCCTTCAACAAGAAAGGTGGGGCAGTGTACCATGAGGTCAAATTGCTGCGGAGGAAAGCGCCAGTGACTCTGCTCTCCTCTGAGACAAACATGATCTCACTGGGGGAGAAAGAAGGGCAGGACCCCATTGCTGAGCTCCAGATCCCACCTAATGCCTTTTACAGAGAAAATGGGGAGGTTTATGTGGGAAAAGTCAAAGCCAGCGTGACATTCCTGGATCCCAGAGACATATCCACAGCAACAGCTGCTCAGAGCGACCTCAACTTTGTGGGCGAGGAAGGGGACGTGCTGCCTCTAGTGACCTACGGCATGTTCTCAGTGGACTTCACGGATGAGGCCATGACAGAGTCCCTAAATGCCGGCAAGGTGAAGGTGTTTCTGGACTCGGCTCAGGTACGTATGCCGGAGCACCTTAGTGGGATGAAGCTGTGGTCCCTCAACCCAGAGACAGGCTTctgggaggaagagggagactTCCACCTGGAGAAGACCAGGCGCGGGAAACGGGAGGAAAGATCCTTCCTGATCGGTAACATGGAAATCAAGGAACGCCGACTGTTTAACCTGGATGTGCCAGAGAACAGGAGGTGCTACGTCAAAGTCAGAGCCTTCCGCAGCGAGAGGTTCATGCCGAGCGAGCAAGTGGAAGGGGTGGTGATCACCCTGATCAACATGGAGCCTACCCCAGGTTTTTCCTCCAACCCCAGGGCCTGGGGGCGCTTCGACAGTGTCATAACCGGCTCAAATGGGGCCTGCTTGCCGGCTTTCTGTGATGACCAGAAGACGGATGCTTATACTGCCTACGTGATGGCCAACATCGGTGGTGAGGAGTTGGAAGCAGTCTCGTCATCACCAAAATTCAACCCCAACGCTATTGGAGTCCCCCAGCCCTACCTGAACAAGCTGGGCTACAGGAGAACAGACCATGAAGACcccaaaatgaaaaagacagcCTTCAAGATGAACGTGGCAAAGCCCAGCCCCAACGCCGCAGAGGAGAGCAACGGCCCCGTCTACTCGTTCGAGAACCTGAAGGAATGCGAGGAGGCCCCATTTACAGCAGGCCACTTCAGGTTCTACCGGGTGGAGGGAGACCACTATGACTACAACACGGTCCACTTCAATGAGGATGATCCCATGAGCTGGACTGCGGACTATCTGAGTTGGTGGCCCAAGCCCATGGAGTACAGGGCGTGCTACATCAAGGTGAAGATAAACGGCCCCAAGGAGATCATGGTGCGCTCCCGGAACATGGGAGGCACCCACCCACAGACGGTCGGGAAGCTGTACGGAATCCGGGACGCGCGTAGCACCCGAGACATGGACCAGTCCAACTTGTCAGCTGTCTGCCTGGAGTTCAAGTGCAGCGGAATGCTTTACGACCAGGATCGTGTGGATCGAACCCTGGTCAAGATCATCCCCCAGGGAAGCTGCAAGCGAGACAGCGTGGACAGCATGCTGCAGGAGTACCTGGTGAACCACCTCCCGCTGGCGGTCAACAATGACACCAACGAGTTCACCATGCTGGCCCCCCTGGACCCCCTGGGCCACAACTACGGCATCTACACCGTGACCGACCAGGACCCCAGGACGGCGAAGGAGATCGCTCTGGGTCGTTGTTTCGACGGGACCTCCGATGGCACCTCCAGGGTCATGAAGAGTAACGTGGGGATGGCCCTTACTTTCACCTGCGGGGACAGGCAGGCAACGCGGCAGAGTGTGTTCCAGGCGCTGCAGAACTCACCCGGACAGACGCTGGTGAGCGCTGTGAGGGAAAGCAGGCGCagcaggagacagaggggcAGCAGGCGTCCTCGCATCGCTCAAGTCCCTCTCCGCAGGACCACAGCTGGCTAG

Function

GO: NA

KEGG:

id description
K24436 CILP; cartilage intermediate layer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29906 lncRNA upstream 17253 19010714 ~ 19014831 (+) True AMCG00007452
TU29811 lncRNA upstream 312290 18714671 ~ 18719794 (+) True G23804
TU29795 lncRNA upstream 407025 18623921 ~ 18625059 (+) True G23791
TU29783 lncRNA upstream 443016 18588866 ~ 18589068 (+) True G23782
TU29782 lncRNA upstream 443394 18588016 ~ 18588690 (+) True G23781
TU29916 lncRNA downstream 327 19048086 ~ 19050603 (+) False G23891
TU29914 lncRNA downstream 1490 19049249 ~ 19112325 (+) False G23891
TU29915 lncRNA downstream 1490 19049249 ~ 19050603 (+) False G23891
TU29919 lncRNA downstream 3218 19050977 ~ 19051613 (+) False G23893
TU29902 lncRNA downstream 32323 19080082 ~ 19083613 (+) True G23886
AMCG00007452 mRNA upstream 17185 19007550 ~ 19014899 (+) False AMCG00007452
AMCG00007451 mRNA upstream 59880 18939265 ~ 18972204 (+) True AMCG00007451
AMCG00007450 mRNA upstream 135455 18875555 ~ 18896629 (+) True AMCG00007450
AMCG00007447 mRNA upstream 217156 18810855 ~ 18814928 (+) True AMCG00007447
AMCG00007446 mRNA upstream 241996 18750470 ~ 18790088 (+) True AMCG00007446
AMCG00007458 mRNA downstream 95374 19143133 ~ 19167032 (+) True AMCG00007458
AMCG00007464 mRNA downstream 132036 19179795 ~ 19182234 (+) True AMCG00007464
AMCG00007466 mRNA downstream 142987 19190746 ~ 19194345 (+) True AMCG00007466
AMCG00007465 mRNA downstream 171031 19218790 ~ 19236741 (+) True AMCG00007465
AMCG00007467 mRNA downstream 255350 19303109 ~ 19338989 (+) True AMCG00007467
TU29768 other upstream 461620 18567769 ~ 18570464 (+) False AMCG00007433
TU29705 other upstream 739746 18290108 ~ 18292338 (+) True G23724
TU29676 other upstream 823776 18207078 ~ 18208308 (+) True G23698
TU29675 other upstream 830124 18198768 ~ 18201960 (+) True AMCG00007417
TU28988 other upstream 3744124 15286497 ~ 15287960 (+) False AMCG00007352
TU29920 other downstream 3583 19051342 ~ 19056133 (+) True G23893
TU30494 other downstream 2012642 21060401 ~ 21066783 (+) False AMCG00007514
TU30868 other downstream 3233941 22281700 ~ 22282958 (+) True G24606
TU31151 other downstream 4141701 23189460 ~ 23193521 (+) True G24824
TU31514 other downstream 5144462 24192221 ~ 24194481 (+) True AMCG00007631

Expression Profile