RNA id: AMCG00007454


Basic Information

Item Value
RNA id AMCG00007454
length 1268
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00007454
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19050072 ~ 19056271 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTGCTATAACTCCTTACTCCCAGTAGGGGGCGAGATGGCGCCTGTCCTCCAATGTCCCATCATTCTCTGCGCGCTGCCGCCAGCCCGGCCGGATTCGCTCTCTTCCTggcgcacagacacacacacagcaagatGGCGGACGTCGACTCCTGGGACGCCGACAACTTCGAGGAGCAGGATGAGCCGATCAAGAAAGTGCCCGTGTTGGACAAGTGGGAAGGCGAGGACGAGGAGGAAGACGTGAAGGACAATTGGGATGATGACGAAGATGAGGAGAAGAAGgcagaggagaaaaaaacagACGTTAAAGTTTCAGACAAgaaaaaattaattgaaaagatCAAAGAGAAGGAGACCCGACAGAGGAAAAAGCAGGAGGAAATCAAAAAGAGGTTAGAGGAATCCGAGGCAGAACTGACAGTAGAACAACAGATGGCAGAGAAGCTGCGAGTGAAACAGTTGCAAGAAGAAGCAGACCTTGAACTAGCAAAAGAAGCCTTCGGTGTAAATAATGTAACAGGAATTGATGCCATGAATCCTTCTTCTAAAGATGACTTCACAGAATTTGAAAAGCTGCTAAAGGAAAAGATCTCCCAGTACGAGAAGTCCGTGCACTATTCCAGTTTTCTGGAGTCTTTGTTCCGAGATCTCTGTATTTCATTGGAAGTGGAAGACATGAAAAAAATCAGCACCTCCTTGACAGTTCTATTAACcgaaaaacagaaacaggaaaAGCAAAATAAggcgaagaagaagaagagtaAAGGAGTGCTGCCGGGCGGAGGCCTGAAGGCCAAGCTCAAGGACGACCTGGCCGACTATGGCGAGTACGACGGCGGCTACGCACAGGACTACGAGGACTTCATGTGACGAAGGAGGTGTGCTGGCCTCCTCGCTCTGCTCTCCACAGTCCCTTAAACATGCAGCACAACCTCCTCATTCTGTCCAATGCCATCCTTAAAGATGTGGTATCCTTGTTTGTGCTCGGTCTTTGAAGGTTATAAAGGCTTTACAAAGAACACCATCTCCATGTGGTTTTGTCTCCCGATTTAAGTAGCCACCTGCGacccgatttttttttttttttttttggtcagcCTCCTCAACAAATAACAACCGAAACTTTGTTTTCCGTTTCGAGAGTGACTGTGCCGGAGTGAGAACTGCCTGCAGTAATTGCATATATAGAGAAGGAACAGCATCAAcctggtaaaataaaataaaaaattacaagTCAATTTTTgtaataactatatatttatatat

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03245 EIF3J; translation initiation factor 3 subunit J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29891 lncRNA downstream 148475 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 182593 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 219985 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 264935 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 268980 18780837 ~ 18781092 (-) True G23842
TU30035 lncRNA upstream 423743 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 523510 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 735430 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 811587 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 1154748 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007455 mRNA downstream 24432 19023898 ~ 19025640 (-) True AMCG00007455
AMCG00007457 mRNA downstream 26980 19020720 ~ 19023092 (-) True AMCG00007457
AMCG00007448 mRNA downstream 226466 18815851 ~ 18823606 (-) True AMCG00007448
AMCG00007449 mRNA downstream 239501 18791578 ~ 18810571 (-) True AMCG00007449
AMCG00007445 mRNA downstream 317053 18714615 ~ 18733019 (-) True AMCG00007445
AMCG00007456 mRNA upstream 1986 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007462 mRNA upstream 30931 19087202 ~ 19101380 (-) True AMCG00007462
AMCG00007461 mRNA upstream 52713 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007463 mRNA upstream 81569 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007460 mRNA upstream 112543 19168814 ~ 19179046 (-) True AMCG00007460
TU29846 other downstream 272434 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 991123 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2428167 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2727421 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 858875 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1275242 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1414840 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4915400 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5209553 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_05828041_05831860.mRNA True 851 mRNA 0.45 7 CI01000026 5828041 ~ 5832009 (+)