RNA id: AMCG00007459


Basic Information

Item Value
RNA id AMCG00007459
length 2161
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00007459
representative True

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 19182599 ~ 19187092 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACCGAGCCGGGTCTCATGGGGGAAAAGCGAACAATGGGTCCAAATTAGGGTCCAAATTAGGCGCCGGCTCCTCGTCGGTGGAGAAGCGCGCGCTGTTTGAAGTGTCGCGTCACTGGTCACGCCGGCACGCGGCTGGAACGGCTCCCTCGGGCTCGCGCCGAGTCCCAGAACACACCGCGCCCGCCCGCCCGCCGGAAACGGGTCTTTACGGTGAAATAAGTCATTCTTACACAAGCCTCTTTACATTACATGAATTTATGAATACTGGTTCtttttatatgaaattaaattattataagcTACAGGGCTTCATTGGTGGGTTAATTCGAGATCCTGAATTTGTACCAAGAACGGATTAAGCCAATTTAAGACTCCATGAAAGCAAAGGAGGTTCCCGTAATAAAGGCCTTCTCAACCAAATACctgcattgtgtttgtgttccgaGGTGGTTTACGATATCaatctttgttttgaaataataaacattgattAAAGAGGATGTTTCAAAATAAGAAAGCTTGGTTTTCCAGGAGTGTAGGCAGACATGTGTGCGACGTGTGGGTGTCTGAAGGTGGGATTATTACAAACTGTACTGCAGCAGAATACCTTTTCAGTAATGACGCCTCACATCCTGACACCCAGAGGCTATTCAGGAGTATGGACTACTTTGAGGACAGGCTGACAGTTTTTCACTCCTCCTATATCTCTGCCTGTGAGAAATCCAGAACCAAGGGAGCAGTAGCCATCGGGCACTATGTTCTTCCACCAGACTGCGTTCAGGAAGAAGTGAAAGCAGCGGTCGGATGTTTCATTTGGGAGAAGGAAGACCATAATGGCACAAAAGAgGCAGAAAGTGTCAGACGAACCCAAACAAGAGTGCAGACGGATGAAGAATGCCACAGGTTAAATCCGGGCCACTTAAAAATAGACAAGCGTAAAAGCAGACAGGAAGTGTTTGGGAGGAAAAAGGCACCAAGAGATGGTGCATTGTGTTGTTTCGTTCAGCACTATCCAGTGAATAATATGGTTACAGGCTATGTTTCCAGCAGCGAACTGAAGAAGTATTCAGGAGCGCTGCACAGCTTCACTCCTGGACACGCTGGATATTCAGTGTGCAGAGCTGTGTGAAAAGGATACTTGCCCTTCTGTGGATAACAGACGAGACAGATGCATCATCAGCACTCACTGATATCATTGCAGAGTATCTTCAGTTGCCTGGTTCTGTATTTTACTGTGAAAGTGCCATGCAGTCCCGTGTTGTAGTTAGTAAAAAAGAGTTGAGTATGTTCTATATGTTCTGGCACAGCTCTGTAATATAGtaccattttgtttaaaaatgcagcgCTAACAACTCTGGAGTATGCCTTTTTGTGATAAGTCTCAAAACTAAGAAAACCTTACTTCTGCACTGAAAACCTTTTATTCCCAGACTCTATTACTGtaacaaatgcaatacaatctGTTAAGGAAATGCTTGTTCAGTAATAATTACTAAATTATATCAATAGAAGGAAAGTAATATAATTTCACAGTTCTTATTTGGGCTCAGTCTTTGAAGTGTACCTAGGGATGTTCATGGCTATTGAAGTCCTGTTTTGAGTTGGGTATCTTGGGTCTGTCAGTGCTTCATTCCCTTACACATCCCTGggccgtctgtctgtctgtattacAAATATCGGTTGCTTCTGCTTCCTTTACACTTCCAAGTAAAATGAAGTCCAAACCCTGGAGAAGAAATagatagaagaaaaaaacaggattgtcatttttattatcaATGTGCTATTTTGTTGTCAAACTACATTGTATAAGTGGAATTAAAGATGTGTAATAGTGCAGTGATTAAAGATTTCTCCCTGACAGATTTCAGGGTGGTGTCTGGATCTTGTCAGTGATCTGCACAACAGTAATGTACAAGTCCAAAAGCTAGTTTAGTTTCAGAACAATTATGTTTACAGAAAAACATCAGtagtgattaaaaataaagacatacatttaGTCCTATGTGACAGGGAAACATggcataaacattttatttacaattactATTTCAGTAAAGTAACTATTTGGTTTTGCAATcatccaaaataataaaacttacCAAGAGGGGGTGCTGCAATCCAGATCTCTGGCAAATTATTATCTCCATAAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29891 lncRNA downstream 281002 18901365 ~ 18901597 (-) True G23875
TU29883 lncRNA downstream 315120 18866767 ~ 18867479 (-) True G23867
TU29867 lncRNA downstream 352512 18829865 ~ 18830087 (-) True G23854
TU29851 lncRNA downstream 397462 18781214 ~ 18785137 (-) True G23843
TU29850 lncRNA downstream 401507 18780837 ~ 18781092 (-) True G23842
TU30035 lncRNA upstream 292922 19480014 ~ 19481087 (-) True G23982
TU30064 lncRNA upstream 392689 19579781 ~ 19579984 (-) True G24003
TU30182 lncRNA upstream 604609 19791701 ~ 19797576 (-) True AMCG00007481
TU30194 lncRNA upstream 680766 19867858 ~ 19912916 (-) True G24102
TU30293 lncRNA upstream 1023927 20211019 ~ 20222004 (-) False AMCG00007494
AMCG00007460 mRNA downstream 3553 19168814 ~ 19179046 (-) True AMCG00007460
AMCG00007463 mRNA downstream 42147 19137840 ~ 19140452 (-) True AMCG00007463
AMCG00007461 mRNA downstream 55579 19108984 ~ 19127020 (-) True AMCG00007461
AMCG00007462 mRNA downstream 81219 19087202 ~ 19101380 (-) True AMCG00007462
AMCG00007456 mRNA downstream 108453 19058257 ~ 19074146 (-) True AMCG00007456
AMCG00007470 mRNA upstream 295520 19482612 ~ 19512979 (-) True AMCG00007470
AMCG00007471 mRNA upstream 393326 19580418 ~ 19583227 (-) True AMCG00007471
AMCG00007475 mRNA upstream 416003 19603095 ~ 19622942 (-) True AMCG00007475
AMCG00007474 mRNA upstream 456861 19643953 ~ 19652843 (-) True AMCG00007474
AMCG00007477 mRNA upstream 527101 19714193 ~ 19717796 (-) True AMCG00007477
TU29846 other downstream 404961 18776360 ~ 18777638 (-) True G23838
TU29633 other downstream 1123650 18055470 ~ 18058949 (-) True G23661
TU29265 other downstream 2560694 16530174 ~ 16621905 (-) False AMCG00007375
TU29239 other downstream 2859948 16320997 ~ 16322651 (-) False AMCG00007365
TU30203 other upstream 728054 19915146 ~ 19923153 (-) True AMCG00007487
TU30340 other upstream 1144421 20331513 ~ 20331811 (-) True G24217
TU30382 other upstream 1284019 20471111 ~ 20472704 (-) True AMCG00007500
TU31390 other upstream 4784579 23971671 ~ 23972665 (-) True G25026
TU31562 other upstream 5078732 24265824 ~ 24267921 (-) False AMCG00007637

Expression Profile